Gene
RNA
| Item | Value |
|---|---|
| gene id | G322787 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000110 |
| NCBI id | null |
| chromosome length | 4324856 |
| location | 717591 ~ 717822 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU367002 | True | 232 | lncRNA | 0.58 | 1 | 717591 | 717822 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000110_00485210_00497592 | AUP1 | coding | downstream | 219736 | 485210 ~ 497855 (-) |
| CI01000110_00479846_00482461 | TUBB4A.S, MGC53997, TUBB4B, TUBB4A, TUBB4B.L, TUBB, TBB2C, TUBB2B | coding | downstream | 233594 | 479710 ~ 483997 (-) |
| CI01000110_00407073_00438547 | KCTD8 | coding | downstream | 278591 | 406504 ~ 439000 (-) |
| CI01000110_00326156_00333256 | NA | coding | downstream | 382930 | 325855 ~ 334661 (-) |
| CI01000110_00319793_00324629 | NA | coding | downstream | 392962 | 319692 ~ 324629 (-) |
| CI01000110_00749362_00764862 | NA | coding | upstream | 31081 | 748903 ~ 764948 (-) |
| CI01000110_00779093_00781105 | LBX2 | coding | upstream | 60752 | 778574 ~ 781656 (-) |
| CI01000110_00929399_00931607 | NANOS1, NANO1 | coding | upstream | 211324 | 929146 ~ 931725 (-) |
| CI01000110_01112020_01115441 | NA | coding | upstream | 394104 | 1111926 ~ 1115582 (-) |
| CI01000110_01126191_01127662 | NA | coding | upstream | 408013 | 1125835 ~ 1127662 (-) |
| G322786 | NA | non-coding | downstream | 2434 | 714958 ~ 715157 (-) |
| G322779 | NA | non-coding | downstream | 15122 | 702232 ~ 702469 (-) |
| G322758 | NA | non-coding | downstream | 39921 | 677438 ~ 677670 (-) |
| G322756 | NA | non-coding | downstream | 47038 | 670331 ~ 670553 (-) |
| G322714 | NA | non-coding | downstream | 58820 | 657953 ~ 658771 (-) |
| G322761 | NA | non-coding | upstream | 49171 | 766993 ~ 770326 (-) |
| G323048 | NA | non-coding | upstream | 267254 | 985076 ~ 1134588 (-) |
| G323107 | NA | non-coding | upstream | 428293 | 1146115 ~ 1146378 (-) |
| G323110 | NA | non-coding | upstream | 432045 | 1149867 ~ 1150154 (-) |
| G323124 | NA | non-coding | upstream | 457038 | 1174860 ~ 1175081 (-) |
| G322580 | NA | other | downstream | 611772 | 103265 ~ 105819 (-) |
| G323133 | NA | other | upstream | 488007 | 1205829 ~ 1236849 (-) |
| G324936 | NA | other | upstream | 2397636 | 3013673 ~ 3120099 (-) |
