Gene
RNA
| Item | Value |
|---|---|
| gene id | G323388 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000110 |
| NCBI id | null |
| chromosome length | 4324856 |
| location | 1519759 ~ 1520020 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU367702 | True | 262 | lncRNA | 0.49 | 1 | 1519759 | 1520020 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000110_01436253_01450759 | NA | coding | downstream | 69000 | 1436205 ~ 1450759 (-) |
| CI01000110_01432049_01434499 | RAB33A | coding | downstream | 85260 | 1431705 ~ 1434499 (-) |
| CI01000110_01422600_01428949 | SELT2 | coding | downstream | 90810 | 1421628 ~ 1428949 (-) |
| CI01000110_01135230_01139236 | AP1AR | coding | downstream | 380523 | 1135131 ~ 1139236 (-) |
| CI01000110_01126191_01127662 | NA | coding | downstream | 392097 | 1125835 ~ 1127662 (-) |
| CI01000110_01864492_01865547 | NA | coding | upstream | 344458 | 1864478 ~ 1865547 (-) |
| CI01000110_01988105_01990600 | SLITRK4 | coding | upstream | 466569 | 1986589 ~ 1991741 (-) |
| CI01000110_02794268_02794597 | NA | coding | upstream | 1274162 | 2794182 ~ 2794597 (-) |
| CI01000110_02890041_02906679 | NA | coding | upstream | 1369940 | 2889879 ~ 2908219 (-) |
| CI01000110_03015589_03024689 | IDS | coding | upstream | 1495230 | 3015250 ~ 3025361 (-) |
| G323346 | NA | non-coding | downstream | 63068 | 1456412 ~ 1456691 (-) |
| G323322 | NA | non-coding | downstream | 76250 | 1365659 ~ 1443509 (-) |
| G323342 | NA | non-coding | downstream | 100113 | 1419346 ~ 1419646 (-) |
| G323274 | NA | non-coding | downstream | 172446 | 1282046 ~ 1347313 (-) |
| G323395 | NA | non-coding | upstream | 15564 | 1535584 ~ 1536004 (-) |
| G323559 | NA | non-coding | upstream | 234529 | 1754549 ~ 1754759 (-) |
| G323581 | NA | non-coding | upstream | 260979 | 1780999 ~ 1781243 (-) |
| G323722 | NA | non-coding | upstream | 305275 | 1825295 ~ 1825512 (-) |
| G323748 | NA | non-coding | upstream | 333071 | 1853091 ~ 1853302 (-) |
| G323133 | NA | other | downstream | 282910 | 1205829 ~ 1236849 (-) |
| G322580 | NA | other | downstream | 1413940 | 103265 ~ 105819 (-) |
| G324936 | NA | other | upstream | 1595438 | 3013673 ~ 3120099 (-) |
