Gene
RNA
| Item | Value |
|---|---|
| gene id | G323962 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000110 |
| NCBI id | null |
| chromosome length | 4324856 |
| location | 2141605 ~ 2142071 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU368329 | True | 467 | lncRNA | 0.42 | 1 | 2141605 | 2142071 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000110_01988105_01990600 | SLITRK4 | coding | downstream | 149864 | 1986589 ~ 1991741 (-) |
| CI01000110_01864492_01865547 | NA | coding | downstream | 276058 | 1864478 ~ 1865547 (-) |
| CI01000110_01436253_01450759 | NA | coding | downstream | 690846 | 1436205 ~ 1450759 (-) |
| CI01000110_01432049_01434499 | RAB33A | coding | downstream | 707106 | 1431705 ~ 1434499 (-) |
| CI01000110_01422600_01428949 | SELT2 | coding | downstream | 712656 | 1421628 ~ 1428949 (-) |
| CI01000110_02794268_02794597 | NA | coding | upstream | 652111 | 2794182 ~ 2794597 (-) |
| CI01000110_02890041_02906679 | NA | coding | upstream | 747889 | 2889879 ~ 2908219 (-) |
| CI01000110_03015589_03024689 | IDS | coding | upstream | 873179 | 3015250 ~ 3025361 (-) |
| CI01000110_03084686_03087106 | NA | coding | upstream | 942368 | 3084439 ~ 3087106 (-) |
| CI01000110_03095980_03103572 | RNF20 | coding | upstream | 953385 | 3095456 ~ 3103572 (-) |
| G323827 | NA | non-coding | downstream | 47887 | 2093511 ~ 2093718 (-) |
| G323748 | NA | non-coding | downstream | 288303 | 1853091 ~ 1853302 (-) |
| G323722 | NA | non-coding | downstream | 316093 | 1825295 ~ 1825512 (-) |
| G323581 | NA | non-coding | downstream | 360362 | 1780999 ~ 1781243 (-) |
| G323559 | NA | non-coding | downstream | 386846 | 1754549 ~ 1754759 (-) |
| G323965 | NA | non-coding | upstream | 9555 | 2151626 ~ 2151847 (-) |
| G323969 | NA | non-coding | upstream | 28691 | 2170762 ~ 2170983 (-) |
| G323975 | NA | non-coding | upstream | 42584 | 2184655 ~ 2184892 (-) |
| G323983 | NA | non-coding | upstream | 52497 | 2194568 ~ 2194827 (-) |
| G323985 | NA | non-coding | upstream | 59014 | 2201085 ~ 2201412 (-) |
| G323133 | NA | other | downstream | 904756 | 1205829 ~ 1236849 (-) |
| G322580 | NA | other | downstream | 2035786 | 103265 ~ 105819 (-) |
| G324936 | NA | other | upstream | 973387 | 3013673 ~ 3120099 (-) |
