G325055


Basic Information

Item Value
gene id G325055
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 3284309 ~ 3284721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU369496
TCTGCAGCAGTATCTAAATTTTACACATTAACGAGTTACAGAAAACTAAACAGAAAGCAAGGCTGCTCGTTTTTGTGTCTGTGGAAAACTGCGTTGTATTGCACGTAGGAACAGGCTATATTCAGTTCGTAATGAGATCAGTTCGTCGGAGTAAATAAGCCGTTCTTGCATGTGTATTTGTTTTCTAGTGATTAGAAACAGCGCAGCTATCGAAAAGGCGAGCTTTATATCGAATTAAAGTGCCTGTGCTAATGTTGAAATATCGTAATATTTATGTGCATTTGTTCACTGAAAGCGCACTGTTGTTTAAGTATTGAGGAAAAAGTTCTTTCTCATAAATCTTGGAACGGGCGAGGCAGCATAGTGCTGACATTAGTTATTGTGCGGAGCGCTGGACTTCAATTGCACCCAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU369496 True 413 lncRNA 0.40 1 3284309 3284721

Neighbor

gene id symbol gene type direction distance location
CI01000110_03281209_03283417 EGR1 coding downstream 460 3279762 ~ 3283849 (-)
CI01000110_03220300_03222003 NA coding downstream 62306 3219820 ~ 3222003 (-)
CI01000110_03196898_03206968 PPP2R2C coding downstream 77341 3196182 ~ 3206968 (-)
CI01000110_03152754_03157924 MAEA, MAEA.S coding downstream 126385 3152465 ~ 3157924 (-)
CI01000110_03138199_03142034 NA coding downstream 141955 3137280 ~ 3142354 (-)
CI01000110_03438821_03442595 NA coding upstream 154052 3438773 ~ 3442661 (-)
CI01000110_03453577_03480559 KDM3B coding upstream 168146 3452867 ~ 3480559 (-)
CI01000110_03488751_03505468 SPON2, SPON2A coding upstream 202676 3487397 ~ 3505468 (-)
CI01000110_03523710_03531446 CTBP1, CTBP2 coding upstream 238619 3523340 ~ 3531446 (-)
CI01000110_03543809_03557376 ANKRD13D coding upstream 258969 3543690 ~ 3557493 (-)
G324966 NA non-coding downstream 4880 3279047 ~ 3279429 (-)
G325047 NA non-coding downstream 25100 3258988 ~ 3259209 (-)
G325046 NA non-coding downstream 25370 3258708 ~ 3258939 (-)
G324978 NA non-coding downstream 84173 3147520 ~ 3200136 (-)
G325020 NA non-coding downstream 139974 3143932 ~ 3144335 (-)
G325063 NA non-coding upstream 7994 3292715 ~ 3292964 (-)
G325079 NA non-coding upstream 30229 3314950 ~ 3315189 (-)
G325094 NA non-coding upstream 60136 3344857 ~ 3345105 (-)
G325107 NA non-coding upstream 75255 3359976 ~ 3360190 (-)
G325113 NA non-coding upstream 96890 3381611 ~ 3381892 (-)
G324936 NA other downstream 164210 3013673 ~ 3120099 (-)
G323133 NA other downstream 2047460 1205829 ~ 1236849 (-)
G322580 NA other downstream 3178490 103265 ~ 105819 (-)

Expression


Co-expression Network