XLOC_011197


Basic Information

Item Value
gene id XLOC_011197
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 4460750 ~ 4465558 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024452
TCCTGCAGTATTACAATTTCAAAAAATGAGTCTTGTTGAGAAGAAAGAGGATATTCACAAACAAAAAGCTGCATCaccagagcccagctgtgtgtctgtgAAGAGCAATACATCCATGCCTCATCCGCCTGATCTCAGTGATGGAGCAGTGACCTCTTTCCTTAAGACTGCAGCTAAAATGAGTCTCTGTGAGAAGAAAGAGGAGGATATTGACAACCTAAAAGCTctagagcccagctgtgtgtccaTAAAGAGTGATATATCCATGCCTCATCCGCCTGATCTCAGTGATGGAGCAGTGATCTTTGACCTTAAgcCTCAGAGTTTGGTGAGttgtaacatttaatttattctaAAGCTTGTTCACATTTTCATGTTAT
>TCONS_00024451
TCCTGCAGTATTACAATTTCAAAAAATGAGTCTTGTTGAGAAGAAAGAGGATATTCACAAACAAAAAGCTGCATCaccagagcccagctgtgtgtctgtgAAGAGCAATACATCCATGCCTCATCCGCCTGATCTCAGTGATGGAGCAGTGACCTCTTTCCTTAAGACTGCAGCTAAAATGAGTCTCTGTGAGAAGAAAGAGGAGGATATTGACAACCTAAAAGCTctagagcccagctgtgtgtccaTAAAGAGTGATATATCCATGCCTCATCCGCCTGATCTCAGTGATGGAGCAGTGATCTTTGACCTTAAGTAAGCGCAATTGTCCTGTTTGATTTATCCACATAACACATCAAATGacactttttcatttcattttaggcCTCAGAGTTTGGTGAGttgtaacatttaatttattctaAAGCTTGTTCACATTTTCATGTTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024452 False 380 lncRNA 0.42 3 4460750 4465558
TCONS_00024451 True 449 lncRNA 0.40 2 4460750 4465558

Neighbor

gene id symbol gene type direction distance location
XLOC_011196 si:zfos-364h11.2 coding upstream 18909 4427463 ~ 4441841 (+)
XLOC_011195 si:zfos-364h11.2 coding upstream 44678 4398102 ~ 4416072 (+)
XLOC_011194 crls1 coding upstream 74666 4368859 ~ 4386084 (+)
XLOC_011193 mcm8 coding upstream 95429 4325693 ~ 4365321 (+)
XLOC_011191 CU929304.1 coding upstream 218682 4207278 ~ 4242068 (+)
XLOC_011198 NA coding downstream 4735 4470293 ~ 4478732 (+)
XLOC_011199 NA coding downstream 23697 4489255 ~ 4492713 (+)
XLOC_011200 KLHL29 coding downstream 112994 4578552 ~ 4854851 (+)
XLOC_011201 CABZ01016068.1 coding downstream 195361 4660919 ~ 4661043 (+)
XLOC_011202 FO082819.1 coding downstream 404845 4870403 ~ 4870522 (+)
XLOC_011192 NA non-coding upstream 228259 4231389 ~ 4232491 (+)
XLOC_011187 NA non-coding upstream 1275919 3178465 ~ 3184831 (+)
XLOC_011185 LO018445.1 non-coding upstream 1374985 3085649 ~ 3085765 (+)
XLOC_011183 NA non-coding upstream 1435758 2787483 ~ 3024992 (+)
XLOC_011208 CU929322.1 non-coding downstream 1371750 5837308 ~ 5837694 (+)
XLOC_011184 CR853296.2 non-coding upstream 1532558 2928074 ~ 2928192 (+)

Expression


Co-expression Network