CI01000112_00379383_00617969 (RPTOR)


Basic Information

Item Value
gene id CI01000112_00379383_00617969
gene name RPTOR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 379383 ~ 617969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_00379383_00617969.mRNA
ATAAAAATGGACGCTGAGCTCCTTCACTCCCCTGTGGTGGGTCTGGCGGAGGAGGAGGAGGTGGACATGACTGACTGGAACCTTCCACTTGCCTTCATGAAGAAACGGCACACAGAGAAGATTGAGGGATCCAAAGCTTTGGCTCAGAGCTGGAGAATGAAAGACAGGATGAAAACTGTAAGTGTGGCTCTAGTTTTATGTCTCAATGTTGGCGTGGACCCTCCTGATGTAGTCAAGACTTCACCCTGTGCCAGACTAGAGTGCTGGATAGACCCCCTGTCCATGAGTCCACAGAAAGCCCTGGAGACGATAGGGGCCAACCTGCAGAAACAGTATGAGAACTGGCAGCCCAGGGCCCGCTATAAGCAGAGTTTGGACCCTACAGTTGATGAGGTGAAGAAGTTGTGTACCTCACTACGGAGAAATGCCAAAGAGGAACGTGTTCTCTTTCATTATAATGGCCATGGGGTGCCTCGACCCACCGTCAATGGAGAGATTTGGGTCTTCAACAAGAACTACACCCAGTATATCCCTCTCTCCATCTATGACCTACAGACATGGATGGGAAGTCCCTCCATCTTTGTATATGACTGCTCTAACGCAGGGATCATTGTCAAGTCATTTAAACAGTTTGCATTGCAGAGGGAGCAGGAGCTGGAGGTGGCTGCAATAAACCCAAACCACCCGCTGGCTCAGATGCCCCTGCCTCCCTCTATGAAGAACTGCATTCAGTTGGCAGCCTGTGAGGCCAGTGAGCTCCTACCCATGAACCCTGACCTCCCTGCTGACCTTTTCACTTCCTGCCTCACTACACCAATCAAAATTGCCCTACGTTGGTTCTGTATGCAGAAGAGTGCAAAGCTGGTGCCAGGAGTGACCTTGGACTTGATTGAGAAGATCCCAGGCAGACTGAATGACAGAAGGACACCATTAGGAGAGCTGAACTGGATTTTCACAGCTATTACTGACACAATTGCATGGAACGTCCTGCCAAGAGATCTCTTTCAGAAATTATTTCGTCAGGATCTTTTGGTGGCCAGTCTATTTCGTAATTTCCTATTGGCTGAGAGAATTATGAGGTCATATAACTGTACACCAGTCAGCAGCCCCAGGTTGCCACCTACATACATGCATGCTATGTGGCAAGCATGGGACCTTGCGGTGGACATCTGCCTCTCCCAGCTTCCCACCATCATCGAGGAGGGCACAGCCTTCAGGCATAGTCCATTCTTCGCTGAGCAGCTGACAGCCTTTCAGGTGTGGTTGACAATGGGCGTGGAGAACAGAAACCCACCGGAGCAGCTCCCTATTGTCCTGCAGGTCCTCTTGAGTCAGGTACACAGACTGAGAGCACTAGATTTGCTGGGGCGATTTCTGGACCTGGGCCCATGGGCCGTCAGTTTGGCTCTTTCAGTGGGGATTTTTCCGTATGTGTTGAAACTGTTGCAGAGTTCAGCAAGAGAGCTCAGGCCTCTTTTGGTCTTCATCTGGGCAAAGATCTTAGCTGTAGATAGTTCATGCCAAGCTGATCTTGTAAAAGACAATGGACACAAGTACTTCCTGTCAGTGCTGGCTGACCCGTACATGCCCGCTGAGCATCGAACTATGGCTGTCTTTATCCTCGCTGTCATTGTCAACAACTACAACACAGGACAGGTGCGGTGTGCAGCTGTGTTTGCATTGGGTACGTTTGTGGGAAATTCTGCTGAGAGAACAGATCATTCTACCACCATTGATCATAATGTTGCCATGATGCTAGCACAACTCATTAATGATGGCAGTCCCATCGAGCTGGTTGTTGCTCTTAGTCACCTAGTGGTGCAGTATGAGAGTAATTTCTGTACGGTGGCTCTGCAGTTCATGGAGGAAGAGAAAAACTACGCTGTACCTTCACCTGCCAATTCCACAGAGACAGGGAATGTTACCCCGGGTAGGGACAGTCCCGCCATCCCTCGTTTACGATCAGTGAACTCTTACACAAACCTCAGAGCGGCCACCACCTCTCGAACCCTCAATAAGAGCCTTCAGAACCTCAACCTCAACGAGGAGGGTGGTCCAGCAGCATTCTCTCCAGGGAACCTGAGCACCAGTAGCAGTGCCAGCAGTACTCTGGGCAGCCCTGATAATGATGAATACCTTCTCTCCTTTGAAACCATCGACAAGATGAGGAGAGTCAGCTCATACTCTTCCTTAAATTCTCTTATTGGAGTGTCTTTTAACAGTGTATATACTCAGATTTGGAGGGTGTTACTGCATCTTGCAGCTGATCCATTTCCAGACGTCTCTGATCTGGCAATGAAGGTTCTCAACAGCATCGCATACAAGGCCACCATGAATGCTCGCACACAGAGGATTCTGGACTCAGGTTCCTTGACCCAATCAGCACCTGCCAGCCCCACCAGCAAAGGAACTCTCATACATCAAGCAGGTGCTTCCCACAGATCCAAACGCTCTTCATCTCCCTCCAGCGGATCTCCTCCCATGCCTGGTGCTTCCAGCTCCAGTCTTACCAATGAAGTGCCCAAACCGCCGGCCCGGGAGGCACCGCCCAATCGGCCACCATACACACCAACTCTGGGTGGCCAGGCGCCCCACTCGCAGCAGTTCCCACGCACCAGGAAGATGTTTGACAAGGGCCCTGATCAGACTGCTGAGGATGGAGATGAGACAGCTGCTCACAGGAGCTTCATCAGTGTGAGTCTGCAGACAGGTCTTTGCGACTGGAGTGCCAAATACTTCGCTCAGCCAGTCATGAAGATTCCAGAAGAGCATGATTTGGAGAGTCAGGTTCGTAAGGAGAGGGAGTGGAGATTTTTACGTAATGCTCGAGTACGCAGACAAAGCCAACGCATCACTCAGAGAGGAGTGACACGGTTAGATGATCAGATATTCATTAATAGAAACCCAGGAGTGCCATCAGTGGTGAAGTTTCATCCATTTAACCCCTGCATTGCTGTAGCTGACAAAGACTCAATCTGTTTTTGGGACTGGGAGAAAGGAGAAAGGTTGGATTATTTCTACAATGGGAACCCACGGTACACACGCATCACATCCATGGAGTACCTTAATGGGCATGACTGCTCTCTCCTCCTCACTGCTACTGATGACGGAGCATTGCGGATTTGGAAGAACTTTGCTGACCAGAGAAATCCAGAGATGGTCACAGCATGGCAGGGGCTGTCTGACATGCTGCCCACCACACGAGGTTTGGCCCGACGGGTCTCAATCTATCTTGACAGAAGTAAGCAGGGAGGTGCAGGTATGGTGGTAGACTGGGAACAGGAGACTGGCCTCTTGATGACGTCAGGTGACGTTCGAGTCATACGGATCTGGGACACAGAAAGAGAAATGAAAGTGCAGGACATCCCAACAGGAGCAGACAGCTGTGTGACCAGCCTGTCATGTGATCCTCAGCGGTCACTGGTAGCTGCAGGTCTTGGAGATGGATCTGTTCGGGTGTATGACCGCAGAATGGGACCTAACGAATGTCGTGTGATGACGTATAGGGAACACGGTGCTTGGGTGGTGAAGGCACACTTGCAGAAGGAGCCCGAAGGACACATTATCAGTGTCAGTGTGAATGGAGATGTGCGGTTCTTTGACCCACGGACGCCAGAATCAATCAACGTCTTGCAGACAGTGAAAGGACTGACGGCTCTGGACATCCATCCACAGGCAAACCTGTTCGCTTGTGGCTCTATGAATCAGTTTATAGCTGTGTATAACTCCAATGGGGATGTGATCAGCAACATTAAATACTATGATGGTTTCATGGGGCAGAGAATTGGAGCCATCAGCTGCCTGGCCTTCCACCCTTACTGGCCTCATCTGGCCGTGGGCAGTAATGACTACTACATGTCCATCTACTCCGCAGAGAAGAGACTCAGA

Function

symbol description
rptor Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in several processes, including TORC1 signaling; cellular response to amino acid stimulus; and positive regulation of protein serine/threonine kinase activity. Predicted to be part of TORC1 complex. Predicted to be active in cytoplasm. Is expressed in head; notochord; post-vent region; pronephros; and spinal cord. Orthologous to human RPTOR (regulatory associated protein of MTOR complex 1).

GO:

id name namespace
GO:0031929 TOR signaling biological_process

KEGG:

id description
K07204 RAPTOR; regulatory associated protein of mTOR

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_00379383_00617969.mRNA True 3888 mRNA 0.51 34 379383 617969

Neighbor

gene id symbol gene type direction distance location
CI01000112_00220804_00222613 NA coding upstream 156724 220664 ~ 222659 (+)
CI01000112_00071976_00072854 NA coding upstream 306267 71976 ~ 73116 (+)
CI01000112_00059545_00061349 NA coding upstream 317647 59099 ~ 61736 (+)
CI01000112_00627027_00637276 NA coding downstream 9058 627027 ~ 637276 (+)
CI01000112_00655682_00669456 P4HB coding downstream 36810 654779 ~ 669948 (+)
CI01000112_00672164_00673174 PPP1R27, PPP1R27B coding downstream 53970 671939 ~ 673882 (+)
CI01000112_00704149_00718204 CCDC40 coding downstream 86180 704149 ~ 718231 (+)
CI01000112_00727125_00743789 NA coding downstream 109115 727084 ~ 743999 (+)
G327876 NA non-coding upstream 36411 342665 ~ 342972 (+)
G327868 NA non-coding upstream 59860 319269 ~ 319523 (+)
G327866 NA non-coding upstream 66275 312635 ~ 313108 (+)
G327700 NA non-coding upstream 80539 295133 ~ 298844 (+)
G327779 NA non-coding upstream 271336 106831 ~ 108047 (+)
G327892 NA non-coding downstream 60802 678771 ~ 678990 (+)
G327893 NA non-coding downstream 61263 679232 ~ 679470 (+)
G327894 NA non-coding downstream 61515 679484 ~ 679725 (+)
G327899 NA non-coding downstream 65430 683399 ~ 683611 (+)
G327900 NA non-coding downstream 65913 683882 ~ 684162 (+)
G328456 NA other downstream 614053 1232022 ~ 1233118 (+)
G329125 NA other downstream 1999735 2617704 ~ 2618151 (+)
G329194 NA other downstream 2302285 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 4466751 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013341 rptor coding CM030125.1 CM030125.1 28841752 ~ 28914840 (+)