CI01000112_00655682_00669456 (P4HB)


Basic Information

Item Value
gene id CI01000112_00655682_00669456
gene name P4HB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 654779 ~ 669948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_00655682_00669456.mRNA
CTATATAAAACATCTTATTTTCAGTTTAGTTGTAAACCAACTGAACAAACGGAAAATATAGTTGACAAACGATTCTTAGTGTATAACCACAGAAAGGCTGTGGTAAAAGTGACTGCACCATTTCCTGTATCAGTTCATTGTTTTATCCTGTGTTTGGCAGTCCGTAGCATGCAAATCTTTAGACTATGTGTTGGCCTTATTCTCTTCTGTATTTCACTTTTATAAAAATCTCTAAAGGGGGATTTTGCTTATAGATGCATTGACTTTATTTTGACCATTGTGTCCTACAATACGCTCGTGCACTGAAAACTCTTCCTAATAACGGGACAGAATCATCTTAATTCTATTAAGATTTGAAAAAGTTCAATTTCCTAAGTGAAATGGCCGTGGTTACTAAACAGATACAGCCAAATCATGCAAAGAAAACATGCATATAGTAATTTATGATATGCTCGCTTTCCTTCCTGGAGCGTCAAGTCAGGCAGTCATATTATTAATATTCGTGATCAGAGTTAATTCGCCAGTTGACTGGTCATCTCGTCCACTTTTCGCCAAATCTCCTTGCGGATGGTCACGTAGCGTAAATAATATTCATGTGCTACGCATTTGCCGTAGTAGGATTTGTAAGTTCGTATTCAAGACGGGCAGATTCACTTCCAGGTGCTAGGAGACGCGCGGTCCACTCACAATTCAACACGAACAGCGTTTGGCCTCATAAATGCGCATGCGCAGCAGCGTTTTCCTCTCTGTTTCCTGCGCACATTGCCACGTTATTAGCGGCAGACACAAAATTCAAGCGACACTTCAGACTGTTAAAGGTGAAAGAATACCCGCCGCGCTAACAGTCTCCCCGGTTTCCATCACAGTTTCATTAATAGCTGGCACGTTTGGAGGTGATCCGAAATGCTGAAGTTGTTGATTGTGTGTGCACTGGCCGCTACGATCACGGCTGAAATCCCCGAGGAGGAGGACGTGCTTGTACTGAAGAAAAGTAACTTCGAAGAGGCGCTCAAAACTTACCCAAACGTCCTTGTTGAGTTTTATGCGCCCTGGTGTGGGCACTGCAAGGCCCTGGCTCCCGAATATGCCAAAGCAGCTGGTATGCTGAAAGCTGAGGGCTCAGACATCAGACTAGCTAAGGTAGATGCCACGGAGGAATCTGAGCTCGCTCAAGAGTTTGGTGTTCGTGGATATCCCACCATCAAGTTCTTTAAGGGAGGAGAGAAGGAGAACCCCAAGGAGTATTCTGTCATTCCTGCTGTAACCTGTGGCACTCATTACTGGTTTAAGAAGAGCATGATTAAGACAACCTTTGAAACTGTGTGTGACATGTCATTTGGATTGACATCTGGTCGACAGGCTGATGATATCGTCAACTGGCTGAAAAAGCGAACTGGCCCCGCAGCGACTACTTTAAGTGATGTGACACAGGCAGAGTCTCTTATTGCTGATAATGAGGTTGCAGTAATTGGGTTCTTTAAGGATGTTGAATCTGAAGATGCCAAGGCCTTCATTAAAACTGCAGAGGCTGTGGATGACATACCCTTTGGCATCACCTCTGATGATGCAGTCTTTTCAAAGTTTGAAGTTACCAAGGATGGTGTTGTGCTTTTTAAGAAGTTTGATGAGGGTCGGAATACTTTTGATGGAGAGATCAGCAAAGAACAGCTACTGCCCTTCATCAAGGCCAACCAGCTTCCCCTGGTTATTGAGTTCACAGAGCAGACTGCTCCAAAAATCTTTGGAGGTGACATCAAATCCCACATCCTAATGTTTGTACCCAAAACAGCCAAAGACTTCCAGGACAAGATGGACCAATTTAAGAAAGCAGCAGAGGGCTTCAAAGGCAAGATTCTCTTCATCTTTATTGACAGTGATGTGGATGATAACCAGCGAATTCTGGAATTCTTTGGCCTTAAGAAGGAAGAGTGCCCAGCTATTCGCCTCATCACCCTCGAGGAAGAGATGACCAAATACAAACCAGAAACCTCAGAAATCACAGCAGAGAACATCATCACCTTCTGCACAGCCTTCACAGAGGGGAAATTAAAGCCTCATCTGATGAGTCAGGACATTCCTGAAGACTGGGATAAGAACCCTGTCAAGGTCTTGGTGGGCAAGAACTTTGAAGAGGTTGCCTTCAACCCTGCCAAAAATGTCTTTGTAGAATTTTGGCATTACCAGGAGGCCTTAAATTTTGGGCATGTGAATCGTTTGCATTTCCATCTGTGCCCAGTGTTTAAACAGTGGCTAGCCCCCATCTGGGATCAGTTGGGTGAGAAATTCAAAGACAACGCAAACATCGTTGTGGCCAAGATGGACTCCACAGCCAATGAGATTGAAACTGTCAAAGTGCATAGCTTCCCCACGCTGAAGTTCTTCCCTGCTGGCGATGACCATAAGGTAATTGACTACAATGGTGAGAGAACACTAGATGGATTCACAAAGTTTTTGGAGAGTGGAGGAAAAGAAGGTGGAGCACCAGCAGGGGATGAGGATGAGGAATCAGAAGATCTGGATCTTGATGATGCAGAGGAGGATGATTCAGATGTGGAAGAGGGACACGATGAGTTATAAGAGACAGGAAGAAAAGGCGAGACAAAACCCTTCACCACCACCACCTCCACTTTAAACCTCCCTGTCTGTGAACACTAAAGCTTTTCCTAACTAATTGTACCGCCACTGGGCGTTACAGGGTCCTTCGTCAGCCAGTACTTTCATTAGCACCCCAGCTAACCATCTGCAGCCCAGAGAAGTGCCTCTCTGCCCACAACAACTTTATCTCTTTCAAGTGTTTGATTTTGCTTTTTTTTTTTTTTTTTTTTTTGGCATTAAACTATATTTGGTTTTTAGGTTTAATTGTAATGGTAATGTTTAACTGCTCTTTACCTGTCCACTACCTCCATTTATACTCTGGGGGGCTAAGATTTTAAGATTTTGCAGTTTAATACTGGTAAAACTCTCCCTATGAAGGAGGGGGAAAGTCAGTTATTCTGCCTTGATTCTGTGATATGAGTGAAAGGATATTTTAGGGCAGAGGGGCTGTATGTTGATGTTCATAGGGTGGAA

Function

symbol description
p4hb Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to several human genes including P4HB (prolyl 4-hydroxylase subunit beta).

GO:

id name namespace
GO:0006457 protein folding biological_process

KEGG:

id description
K09580 PDIA1, P4HB; protein disulfide-isomerase A1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_00655682_00669456.mRNA True 3069 mRNA 0.44 13 654779 669948

Neighbor

gene id symbol gene type direction distance location
CI01000112_00627027_00637276 NA coding upstream 17503 627027 ~ 637276 (+)
CI01000112_00379383_00617969 RPTOR coding upstream 36810 379383 ~ 617969 (+)
CI01000112_00220804_00222613 NA coding upstream 432120 220664 ~ 222659 (+)
CI01000112_00071976_00072854 NA coding upstream 581663 71976 ~ 73116 (+)
CI01000112_00059545_00061349 NA coding upstream 593043 59099 ~ 61736 (+)
CI01000112_00672164_00673174 PPP1R27, PPP1R27B coding downstream 1991 671939 ~ 673882 (+)
CI01000112_00704149_00718204 CCDC40 coding downstream 34201 704149 ~ 718231 (+)
CI01000112_00727125_00743789 NA coding downstream 57136 727084 ~ 743999 (+)
CI01000112_00779771_00783376 CBX4 coding downstream 109425 779373 ~ 783522 (+)
CI01000112_00789475_00790952 CBX8 coding downstream 118808 788756 ~ 791433 (+)
G327708 NA non-coding upstream 180884 465684 ~ 473895 (+)
G327876 NA non-coding upstream 311807 342665 ~ 342972 (+)
G327868 NA non-coding upstream 335256 319269 ~ 319523 (+)
G327866 NA non-coding upstream 341671 312635 ~ 313108 (+)
G327700 NA non-coding upstream 355935 295133 ~ 298844 (+)
G327892 NA non-coding downstream 8823 678771 ~ 678990 (+)
G327893 NA non-coding downstream 9284 679232 ~ 679470 (+)
G327894 NA non-coding downstream 9536 679484 ~ 679725 (+)
G327899 NA non-coding downstream 13451 683399 ~ 683611 (+)
G327900 NA non-coding downstream 13934 683882 ~ 684162 (+)
G328456 NA other downstream 562074 1232022 ~ 1233118 (+)
G329125 NA other downstream 1947756 2617704 ~ 2618151 (+)
G329194 NA other downstream 2250306 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 4414772 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032767 p4hb coding NC_007117.7 CM002890.2 18203464 ~ 18228358 (-)