CI01000112_00727125_00743789


Basic Information

Item Value
gene id CI01000112_00727125_00743789
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 727084 ~ 743999 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_00727125_00743789.mRNA
GTTTATATGTTTGGCAAAGTGTCTGATTTCAGGATTTCAGCATGACTGAGAGTGTCCTGAACACTCCAGACTTAAAGGATCTAGAGGAAGAAGAACTGTGGGATCTTATTAATGATAACCGCCATGCCATCTCTATCGGCGTCCGTCCCTGTGTTCTCATCCCTTACCTGCGCCAGGCACGTGTCCTCACAAACCTGGATGAGGATGAAATTTTTACCAATCCCCGTATCATCAACCGCTGCATGAGGACCGGTTATATGCTTGACATGTTGCATATACAGGGTCGTAATGGAGCAATGGCTCTGCTCGAAAGTCTGATGATTCATTACCCAACTCTCTACACACAGATCACTGGCCGCCAGCCCAGCATTGAGCCTTCAGGCTTCAGTGGCCTGATAAATTACACTGAGCTGACAGAGTACCTAGTTAATGCGGTAAGCAGTATGCAGACAGAGCTACAAGTGGCACGTCAAGAGGTTGTGCGGCTGCGAGCTCGATGCTGTGAGCTGGAGGGGAAACTAGAACAGGTCCAACAAAATAATGAAGAGTTCAGACAGATGCAGGAAGAGCACGGACAACTGCGCAGTCATCTAGATGTTTTAAACAGGAAACTGCTGAAACTGAAGGATGAGAAATGTGATCTCTATGTCAGATATACCACAGTTCTTGAGGAGAAGTCTGCAACCATCATACGCAACAGAGACCTGCAACTGGAGATTTACCAGCTGCAGTGTGAGTTAAGGAAGGCACAGAAAGAGACAGACTTCCAAAGGCAGCGTTCCTTAAAGAATCCCAGTGACACACAGAAGCTTAAAGATGAACTCAACGCTGTACGCGCAAAATTACTGGAGACTGAGATATTCTCCCCGGTACAGCAGGACATCCTTGAGAATGATTTAAAGGAGACAGAAACCAGACGTTCAGAACTTGCCGAGGATGTCAGTAGACTAAGCGAGGAGAATGAACGACTCCAGCAAGAAAAAGAGGAGCTCATAGAAGAGAAAGGCTATTTAGCCTTGGAGGTGGAGAAGTTGACTGTGGACCGTGAGATGTACCAGCACAGGAGTACACTGTTCCAGAGTCAGCTAGAAGAGGTGCAGTCAGAGAGAGACAAGGCATATTTGTCCCGTGATGAGGCCCAGGCTCAGATTGCACGGAGTCTCGCAGAGAAGGATGTGCTGAGAGGACAACTAATGGAGCTACAGGAAAAGGTTTTCACCATGAAAGCCTGTAGCAGGCAAAGAGAAAGAAGAGAAAAATCCAGGGACAGGAAGTTCAGTTGCGAGAGCAGTGAGGGCCCTCCTCCCAGCCCCCCACCCAGAAGACGGCTATGTCGCTTGAAAGCAATCCTTCCTGAGTCTTTCAGCTCATATGAGTTCAATGATGAAGTAATCAACAGTATCAGTTCCAATCAAGTGGAGCCCCCCTGTTCTGAATCTCTCCGTAGACGAGAGTTACACTTTCCCTCCAGAAGTGACATGGAAGACATTTACAGCAGTCAGGAGCTGACCGATGACTCTTCTGATTATGTGGTCATTCCTAAAGGTACTGTTACTTCCTCCTACATTACATCGTGGTTACCCAAACAAGCTAAAATGAAATCATTTGAACAAGTCAATATCACCCACATCACTTCACAAGAGGAGCCCTACTGGCAGGGAGAAATGTTATTGAACCAACTACAGGTCATCGGGGGTAATAAGACCGGTGTGTTCGTGCATCATGTGACCGAAGGATCATCTGCTCATAACAGTGGCATTAGCCCTGGAACTCAGATACTTCAGCTAAAATATGAGCAGGAGCAGAGAGCTGTACAAATGGTTCTGGAAGACACCACTATGGAGGAGGCCCTGTGGGCCCTGGGGCAGGTCCAGGGACCATGCCACATTACACTGAGACCCAGCCAAGATGCCTACGAGAACCTTCTACAGCAGCTAAAAAATGGTGAAGTCATGTCGGGTGATTCCTTCTACATCCGTGTTAATATGACGTTGCCGGGGGATGTAGCAGGAACTCTGCCGGTCAAGTGTAATGATATTGTCCATGTTACAAACACTCACCATTCCAACGATGGCTTCTGGTGGGCCAGTCATGTGCACCCTTGTCACCTGGAAGACCTGCACAGTGGGGCTCTACCCAACTACTACAGAGCACAGAGGCTGTTAATAAGTGCTATAGAGGATATGACTTACCCTTGCAAAACACTCAGAAAGGAGAGAACTGCAGCTAATGGGAAGCAGAGAGAGGTGAGGATTGTCAGCACCTGTCAACAGAACAGAAACCCTCTGTGGGTCAGTGTGGAAGACGACAACACTACAGCACTGGACAGTTATGGCTGTGTGCCCAGCAGATGTGTGACTCTGATGCCCTACACCCTAGTCACACCTCAGTTCCCTCCCATCTGTCGCCCAGTCCTCCTCCTTCCCACAATCTTTGGCCATGTCTTGCACAAACGGTTGGCAGAACAGGAAGGTTATCAGCTCTGTGAGCCAGAATTGCTGATGGCAAGTGAGCATGCCGTACAAATGCAGAAGGGGGAGATTCTTGAAGAATGTGACTCGAAAACACACCGTTGCTATACACTGCAGGGAGTGGAGAAAATCATGAAACGGGGCACTCACTGTGTGTTACCGCTGGGTTTGGACTGTGTGCGTCGTCTCCATCGTGCTGAAATCTTCCCCATTATTGTCTACATCATGTCTACGGAGAGAGCTCTCCGCAGATTGAGACACAAACTACGGCAGAGCTCTGTGACTGAGTCTCAGGTGCTGGAGTGTTCCTGCAATGAGGAGCCCCTTCTGGATAAACTGCCCTGCCTTTACCGAAGCATTCCACCAGAGAGCTGGCATGACAGTGCCACCCTAGTGGACACTGTGAAAACTGTGGTGAGAGAGGAGCAGAATAAGATTGTGTGGGTTGAGGCAGATCCCTGGTGAGGGACTAATGGGAGTGAGGGCGTAAAGTCAAATTTCCCTTACCACAGGCAGCTAATTATTAGTATTAAGGTAAATTTATAATTCTGCATCAAACCTATGCTGTAGACCCTGTGTAGCCATGGTGGTTACGATGTAGCCTGATGTGCATCTTTCTAGAAATTCTGTGAATGGTCAGCCTTATAAACAGAGAACTTCCCCCAGGATGATTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_00727125_00743789.mRNA True 3146 mRNA 0.48 21 727084 743999

Neighbor

gene id symbol gene type direction distance location
CI01000112_00704149_00718204 CCDC40 coding upstream 8853 704149 ~ 718231 (+)
CI01000112_00672164_00673174 PPP1R27, PPP1R27B coding upstream 53202 671939 ~ 673882 (+)
CI01000112_00655682_00669456 P4HB coding upstream 57136 654779 ~ 669948 (+)
CI01000112_00627027_00637276 NA coding upstream 89808 627027 ~ 637276 (+)
CI01000112_00379383_00617969 RPTOR coding upstream 109115 379383 ~ 617969 (+)
CI01000112_00779771_00783376 CBX4 coding downstream 35374 779373 ~ 783522 (+)
CI01000112_00789475_00790952 CBX8 coding downstream 44757 788756 ~ 791433 (+)
CI01000112_00796321_00806383 DGKE coding downstream 52190 796189 ~ 807227 (+)
CI01000112_00857771_00878662 RAB11FIP4 coding downstream 112599 856598 ~ 879626 (+)
CI01000112_00931318_00942127 SUZ12B, SUZ12 coding downstream 187148 931147 ~ 942385 (+)
G327675 NA non-coding upstream 30465 693200 ~ 696619 (+)
G327905 NA non-coding upstream 38320 688545 ~ 688764 (+)
G327900 NA non-coding upstream 42922 683882 ~ 684162 (+)
G327899 NA non-coding upstream 43473 683399 ~ 683611 (+)
G327894 NA non-coding upstream 47359 679484 ~ 679725 (+)
G327705 NA non-coding downstream 5978 749977 ~ 812146 (+)
G327949 NA non-coding downstream 161088 905087 ~ 905301 (+)
G327711 NA non-coding downstream 165057 909056 ~ 911793 (+)
G327950 NA non-coding downstream 167974 911973 ~ 912219 (+)
G327703 NA non-coding downstream 168415 912414 ~ 913421 (+)
G328456 NA other downstream 488023 1232022 ~ 1233118 (+)
G329125 NA other downstream 1873705 2617704 ~ 2618151 (+)
G329194 NA other downstream 2176255 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 4340721 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location