CI01000112_00779771_00783376 (CBX4)


Basic Information

Item Value
gene id CI01000112_00779771_00783376
gene name CBX4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 779373 ~ 783522 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_00779771_00783376.mRNA
ACATAAAATGGATGGAAAATCACACGATTAAAAAAACCATGCTGATGCTGATAATGATTTAGCCTGTCACCTGAACTGCTAAATGACAACTGAATACCTAATCAATCTTAAATTTAAAAAAAAAAAAAAAATGGTTTAATTGCCACTAGTGTTCCCTACTTTGCGTCATGAAAGAAGAATTCTCGCCCCAGACCTGAAGGGCTGCTATAACGACTCTTCATTTGCTGGTAAACCCGCGGCACAGGGCTGAGCAGCCTCTACACCGCCCCTCCTGAGTGTGACGTCAAGCCCACTGCTATTTGCATGAAGTACGTTGTACAGCTCATTTGAGTTAAAACTGAGTCTCACTTGAGAAGCGATCGCGCGCGCACTGAGAAGTATTACAGCGCGCGCTGAAAATGGAGCTGCCCGCCGCGGGTGAGCACGTCTTCGCGGTGGAAAGCATCGAAAAGAAACGCATTAGAAAGGGAAGGTTTGAGTACCTAGTCAAGTGGAGAGGCTGGTCTCCTAAATATAACACGTGGGAGCCAGAGGAAAATATTCTGGACCCGAGACTTCTCGTCGCTTTCCAAAACAGGGAAAGACAAGAGCAGCTAATGGGTTATCGCAAACGAGGGCCAAAACCAAAACATCTACTCCTGCAGGTACCATCATTTGCTCGAAGATCCAGTGTTCTTACAGACCTTCAGGAGGTGTCTCAGGATGAGGATAACCAACCCAAAGCAACTCCAGACCTGGTCCAAAGCCAGCAATACCAGCTTAACAGCAAGAAGCACCATCTCTACCAGCCCAACCCAAAAGACAAGCAGGGAGATGCACAAACAAATGGGAAAAAGAAGCACTACTACCAGCTCAACAGCAAGAAACACCACCACTATCAACCAAACCCTAAAATGTATGACTCCCTGTATCAAAGGGTCAGAGAGACCAAAGTTCCTGAGTTAACTGACAAGGAATGGAATTTATCTCCAGCTTTACAGCAGAAATGGGTTCAAGATAATGATTCTGGGTGCCTCAGTAAGGTGAGGAATATTACAATGGAGTTGAAAAAGCTTTCTAAACTAAATGGTAGAGCTGACTTAAATGTGAACGCAAAGGAGGACACAGCACCGCCCAATGGAATAAGCAGCAAATTGAAGATTGTGAAGAACAAGAATAAAAACGGGCGCATTGTCATTGTCATGAGCAAGTACATGGAAAATGGCACCCAGGCAGCTAAAATTAAGAAAGGAACGGCCAATGCTAAGGAAAAACGGCAAGCACAGGACTGTAAGTCCTGTGGAACAGATGAGAGCACAGAGAAGATAAAGTACACAAAGAAGCAAAGTCTTGTGAAAGTGATAAAAAAGGACAGCAAAGCTGAGTCTGCCTGTTTGGGGCTTTCCAATGGACTATCATCTTGTAAAGGGGACAATCCTAAAAAAGCATGCTCCGTACTGTTTGAGCCAAACAACTCAAAGAAGCCTGACAGCACTGAAGAGCCTGCATTTGATGAACAACCCATGAAACTGACAACCAAAACCAGTCTCCAGTCTCAGACTCCATTGCCTTTTGAGAAGAATGATCAAAGAGGCACCCAATCTAGCCAATATGGTCCCCCCACCTTCCCTCAAAAGCGTTGCTGCTCTGAGGCAGACAGTGGCAGTGGGGAGGCTAAGAGGTTTCTAAGTTCTCCGAGTACAAGTGCTCCAAATACTGACTTGTCTCACTCTTGCAATGGAACCACAGACTTCAATGACCATAAGCACTCTGGCGGACATGACTTTGAAATCCTGGACTTCAACCAAGATGAACCCATAGACCTCAGCTGTGTAAGGTCGAGAGAAGAGAGAAAATTTTCTACACATTCTCAGATTGAAAACTCTATAGCAATTGGGAAAGAAGCAGTGTCCACACCAGAACAAGTAGAGATAGAAGTGAAAAAATCTGTTCCAAGCTTTACACCGTTTCTGGGGAATATAATAATCACTGATGTCACAGCGAACTGCCTCACAGTGACATTCAAGGAGTATGTTAAGTTTAGGAATATGTGACAGATATAAAGTCTATAAAGACTACTGACTATTTACTGTGAATTTTTTACAAATGTAAAGCATGTCTAATCATCAAGTCTTCAAACTTGCCTGAATATTTTGAAACAATCTAGTGTAAAGTTTTGATAGTTTCAGACTGCATTCGA

Function

symbol description
cbx4 Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CBX4 (chromobox 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_00779771_00783376.mRNA True 2179 mRNA 0.44 5 779373 783522

Neighbor

gene id symbol gene type direction distance location
CI01000112_00727125_00743789 NA coding upstream 35374 727084 ~ 743999 (+)
CI01000112_00704149_00718204 CCDC40 coding upstream 61142 704149 ~ 718231 (+)
CI01000112_00672164_00673174 PPP1R27, PPP1R27B coding upstream 105491 671939 ~ 673882 (+)
CI01000112_00655682_00669456 P4HB coding upstream 109425 654779 ~ 669948 (+)
CI01000112_00627027_00637276 NA coding upstream 142097 627027 ~ 637276 (+)
CI01000112_00789475_00790952 CBX8 coding downstream 5234 788756 ~ 791433 (+)
CI01000112_00796321_00806383 DGKE coding downstream 12667 796189 ~ 807227 (+)
CI01000112_00857771_00878662 RAB11FIP4 coding downstream 73076 856598 ~ 879626 (+)
CI01000112_00931318_00942127 SUZ12B, SUZ12 coding downstream 147625 931147 ~ 942385 (+)
CI01000112_00943876_00960636 NA coding downstream 160354 943876 ~ 960636 (+)
G327675 NA non-coding upstream 82754 693200 ~ 696619 (+)
G327905 NA non-coding upstream 90609 688545 ~ 688764 (+)
G327900 NA non-coding upstream 95211 683882 ~ 684162 (+)
G327899 NA non-coding upstream 95762 683399 ~ 683611 (+)
G327894 NA non-coding upstream 99648 679484 ~ 679725 (+)
G327949 NA non-coding downstream 121565 905087 ~ 905301 (+)
G327711 NA non-coding downstream 125534 909056 ~ 911793 (+)
G327950 NA non-coding downstream 128451 911973 ~ 912219 (+)
G327703 NA non-coding downstream 128892 912414 ~ 913421 (+)
G327692 NA non-coding downstream 135225 918747 ~ 925078 (+)
G328456 NA other downstream 448500 1232022 ~ 1233118 (+)
G329125 NA other downstream 1834182 2617704 ~ 2618151 (+)
G329194 NA other downstream 2136732 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 4301198 5076817 ~ 5101845 (+)

Expression


Co-expression Network