CI01000112_02143799_02166631


Basic Information

Item Value
gene id CI01000112_02143799_02166631
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2143745 ~ 2166631 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_02143799_02166631.mRNA
ATCTCCACGGGTTTGGACAGTCTTACTCTTTCTGACTTCAGTCCTGTAAGTTCTGCTCGTGGTGCTCCGCTGTGCATCAAACCCGCAGGCCCAGCGCCCAGCAGCTCCAGCGAATGGCTGAAGACCCACGGCCTGAAGGCTCAGAAGCTGGATCTGTATCAGCTGCTGGCTCGTAATGCCTGTTCTCCACAAGAGACGTTTGTGCCAATCTTGGGAAAGACTGTTTCTGCTACAGTTCATGAGCGGGTGATGGTACAGTTTGAATGGCATGATGGAACAGTGAAGAATTTGCATGTCGATCTTCCATCAGTGCAAAAGTACCAGAAGCGGCTGATGGATGCTGTACGTCTTTTTGAAAGGAGAGTTGAGTGGCTGAACAGGATGGGCAGCCAGCAGATATGGGGAACCGTGTGCGAGCAGAGGGTGCAGGTTCTTCTGGACATGTCTGGGATGAACACCCACTACCAGCTCCACATCCAGCAAGCCCTCCGGATACTCCTGCAGGAGCAGTTGGCTAATAAGCACAGCTTCAATGTTTCTGTCACTGCTTATGTGTCTGAGCGCTGCAGCACAGCAAACCTGAACCTCCATGTGTGCCTGTTCACCGGACAGGAGGACACTGTCCGCTGCCCTCCGCCTCGTCACGCCACACGGTCCGAAACCGCACAAGCTCTGCGCGGCCTGGCACATGCGGGCAATGGACGCTTCCTCTGGACGACTGAGACTGGCATCGTGGAGAGTGATGACATCAGTGCCCTAATTGGAGAAATGGAGACAGCCGCTAATTATTGTCAGAAGTGCTCTGAACTACTGGACTCTCTGATCCAGAAGGGTTCCAGCAGAGGTTCAGGAGAAGCGAGTACCCCATCCCTCAAACCCCAGGCCTGGATCCACAAAACAAAACTGCCGTCTCCCAGACCCACAACACTCAGCCTGGCGAGACTGGAAAGCAGGCAGATGAGCAGATTTGCACAGAACGGCTCAGCTTGGAGGCCGAACAGCTCTAAAGCAGAAATCCCAGCAGTCCAGTCAGCTGATTTCAGCACACCGTCTGGGCTGACAAAGCCTGCTGATCAGATGAGAGCCACTGTGTCTCAGTCTGTCTTCTTCATGGAAGATGGCAACTTGGGTGTTGTCTTCAAGAAATATCCAAAACCCAAGAGTGTGCGCAAGTCTATCAATACCATTAAATTGCCAAAGCATGAAGACATCTGTTCAACTAAACAGGGGGCTGTGAGACACCTGCATCTGACTCCTGGTGAGTTAAAACACTACCTCAATCAGACGGACAAACTGATGCAGCGCTATGGCCGAAGACTGGAGTGGTTACTGAAAGGCAGCAGGCGTATGTTCGGATCAGTGCTGGAAAAGGACGTCTGTGTTCTGCTGGATGTGTCTGGATCAATGGCTCCCTGCCTCCCTGAACTCCAGAAGGGACTGACCTTACTGATCTGGGATCAGCTGCATGCCAACAGCGTGAGGTTTAATGTGTTGGCGTTCTCTGGAGGGGTGCGGATGTGGCAGCCGGCGCTGGTTGAGTCCACTGAGGATCTGTGTACGGAGGCAGTGCAGTGGTTGAGTCAGCTCAGCTCACACGGAGCTTCCTCCACACTGCAAGCACTGCAGACAGGCTGTGGCTTGGCAGATGATGTTGGTCTGTATCTGATCTGTGATGGAGGGTGTGACTCCAGCCACAGTCTAATACTGACAGAGATGGAGACACTGAGAAAAGAGAAGAGCTTCACCGTCCACACCGTCGCACTCAACTGCCATGACAGATCCGGCAGTGAGTTTCTGAAACGTCTGGCCCATAAAACAGGAGGACGTTTCCATCAGGCTCCTGATGACACGGATACAGCTCTTATCAGAAAACTGCTGTCAGACCCCTGCAGTGCAGACCCAGTGCTGCCAAAATTTGAGGGGGACGATCTAAGGAAACTATCAGAGGAGATTGAGAAGCTGAGATTGTTCCAGAAACAAGCTAAAGCTTTCAGGGAAACTATTTTGGGGTCAAGGAACCTGGAAGGAATGTAGACGCTGATCTCCACACCTGTTCAAATCATGACAGCTTTATTTATTCAGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_02143799_02166631.mRNA True 2088 mRNA 0.52 18 2143745 2166631

Neighbor

gene id symbol gene type direction distance location
CI01000112_02096880_02108616 MFSD13B coding downstream 35129 2096566 ~ 2108616 (-)
CI01000112_02087239_02090806 NA coding downstream 52939 2086709 ~ 2090806 (-)
CI01000112_02000588_02006313 NA coding downstream 136612 2000527 ~ 2007133 (-)
CI01000112_01999128_02000283 NA coding downstream 143462 1999119 ~ 2000283 (-)
CI01000112_01967374_01971965 NA coding downstream 171780 1967058 ~ 1971965 (-)
CI01000112_02185619_02204929 C14H16ORF52 coding upstream 18462 2185093 ~ 2212627 (-)
CI01000112_02213671_02227376 NA coding upstream 46669 2213300 ~ 2227643 (-)
CI01000112_02242077_02249490 UQCRC2A coding upstream 75111 2241742 ~ 2249490 (-)
CI01000112_02269456_02270414 NA coding upstream 102201 2268832 ~ 2270414 (-)
CI01000112_02283088_02284461 NA coding upstream 116281 2282912 ~ 2284540 (-)
G329776 NA non-coding downstream 24957 2118564 ~ 2118788 (-)
G329718 NA non-coding downstream 48336 2095180 ~ 2095409 (-)
G329710 NA non-coding downstream 72216 2071216 ~ 2071529 (-)
G329702 NA non-coding downstream 89727 2053580 ~ 2054018 (-)
G329686 NA non-coding downstream 108425 2034946 ~ 2035320 (-)
G329767 NA non-coding upstream 14183 2180814 ~ 2181565 (-)
G329805 NA non-coding upstream 116014 2282645 ~ 2282857 (-)
G329799 NA non-coding upstream 137308 2303939 ~ 2304605 (-)
G329749 NA non-coding upstream 149195 2315826 ~ 2396508 (-)
G329672 NA other downstream 124292 2016704 ~ 2019453 (-)
G329569 NA other downstream 145886 1991666 ~ 1997859 (-)
G329559 NA other downstream 334006 1791084 ~ 1809739 (-)
G329587 NA other downstream 510423 1629776 ~ 1633322 (-)
G328642 NA other downstream 856787 1286655 ~ 1286958 (-)
CI01000112_03068505_03072256 NA other upstream 900689 3067320 ~ 3072879 (-)
CI01000112_03506254_03517454 NA other upstream 1337824 3504455 ~ 3518742 (-)
G330301 NA other upstream 1593168 3758244 ~ 3773774 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025828 vwa3a coding NC_007114.7 CM002887.2 58354852 ~ 58372651 (+)
bowfin (Amia calva) AMCG00018398 NA coding CM030135.1 CM030135.1 9846901 ~ 9880691 (+)