CI01000112_02503439_02516455 (LGALS3BPA, LGALS3BPB)


Basic Information

Item Value
gene id CI01000112_02503439_02516455
gene name LGALS3BPA, LGALS3BPB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2502872 ~ 2516636 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_02503439_02516455.mRNA
CTTTAAAACTGCTCTCAAAACTCACTTATTCACATTCTGTTTTGTTAATTGATTGTTTGTCTCAATTTTCCAGCTCTGTGCTTGTTTTTGTAAGTTTTCATGTAGATTAACTTTCTTTGTCTGTTTCATCTGGTCGATCATGTGTTGTATACTGACTATATACTTGTATATGTATTCATGTTATCTATCAACTTCATGTAAAGCGTCCTTGGGTTCTTGAAAGGGGCTATATAAATAAAACATTATTATTATTATTATTATTATTATTTTTAAATTTAATGGAACTTACTTTACTGTTTACATCATATATTTAGCATTTATTGAAAAATATCTTGGCCAGAATTGTTTTCCCCATATGGATGCCTCCTTCTTAAAAATAAAGGTGTTATAAACCTCCACAGCAATGGTAAGCAACATGGCAATCTTTCTTTCATCCAAAACATATAGCTCTGTTTGAAAGTCCTCCAATTTGAGGAAGAGAATTTGATCGTTACACATTGTGATAACAATAGTCTTTTATTTTTTCTATTATACTTTTGAGGTTCTGGTCCAATCTGGCTGGATGACATGAACTGTAAAGGCTTGGAGAGCTCATTGTCTGAATGCTGCTTCAAAGGCTGGGGTGTTATTGACTGCACACATAAAGAGGATGCAGGAGTGATCTGTGAGACTGAGGAGGAGAGGCTTCATTTGCTCTGCCCTGTTCGGGCTTTAAAGGTGTATGCAGTGGTACACGTTGTCTCATTTGTTTGTATGCTTTTGGTCCTGCTGCCTCTAAGCACAAGATCTCTCAAAGAGCTCTTTGGGCCAGATCTGGCAGCACTTATCTTGGCGTGTGTGACATGTTATCAAGAGAGGTTTAGTCTACAGAGAGTGGAGGTTACACTCCCAATGATATGGAGAATTTTCAGGATAGCAGAAGTGGACCTGTTCGCTTCTGCAGAGAACAACATATCCATGATGCAATCGCCTATAGGAGTTGATGCGCTTGCTCTCCACTATGCTCTTAATGACCGACCAAAGCAGCCAACACAGGAGGGCAGCATAAGATTGGTGGGGGATCATCCTTCATCTGGTCGTGTGGAGATTTATCATGATGGACAGTGGGGTACAGTTTGTGATGACGGATGGGACCTGGCCGAAGCACAAGTGGTGTGTCATCAGATGGGTTTTCCTGGAGCGAAAATAGTTACACCTGGAGGACAATATGGTGAAGGTTCTGGTCCAATCTGGCTGGATGACATGAACTGTAAAGGCTCTGAGAGCTCATTGTCTGAATGCAGATTCAAAGGCTGGGGTGTTACTGACTGCACACATAAAGAGGATGCAGGAGTGGTCTGTGAGACTGGTACAAACATAACCAGCAATCGTCAGTTCTCTGTGGATAACAGTTTGGGTTTGTCTGATGATCTTGGTCTTCTGTTTGATAGTGGAGATGGTTGTGATTTCACCATTAATGTACGAGACCTCAGTGAAAAGGCGGAGTTGATGTTTTGTGTGCACCGTTTGATTCTCATGATTTATCCAGAACTAAACATAACAAATGAGTCCAGAAACCTTACAGTGGATGTCAGCCAGACGTGCCATCTTCATGTCTCTGCTTTTCTCAGGTATTTGTACACACGTCAGATTGATGTTTCCATCACATCAGCTCAATGTCTCCATCAGCTGGCATTTATCTTTGGAGTGAAGAAGCTTATGGAGGATGTTGGCAGGGTCTTCACTTTACTCATTCCTGAAGACAACACCTTCCGGACACAGGTATCCTTGTACGAGTATGGCGTCCGCACAGGTGACCTTGTTCTGCAGGAAAATGTCCTTCAGTATCTTTCCTGGAACTGTGAGTTCCTCATAAGCTCTCCGGTGTGGAGCACCATCTCCTTTCACATGATGGACGCTCTGCTGCAGCGCTCAGACCTGGTTGTGGAGGATGAAGCTTTACTTCTTGAAGCTCTGGAGAGATGGATCCAAGACAAAGGTGATGAAATTAGTTCAGAACAACAGGCCAGCCTCCTGAATCACATCCGCTTCCTCTTGATCCCAGTGGATAAACTGTATGAAATGCAGTTTTCCTCAAGTGTTCTCCATCAGAATCATGAGAAACTTTACCTAAATGGTCTGCTCAGAGGTTTTCAGTTCAATGCTCTAAATTTCTCTAAGATCGGGAGTAAAATGGAAAACATGAATGATTATCTACCCAGAATCTACACTGCTGATGAGTGGAGTCTACATGTAGTTATCAATAAAACAAGCATCAATTACCATGGAAAAAATAACAGATTCCAAACCTTCTCCACTCCTGCACACCCTAGTGCTCTTTACAAAGAGCAGAAGGTCCGGTGGCGAGCACAGGTTTTTCTTAGTGTTCAGGAATGCTCTAACTATGGTGTTTCATGTAATTCTGTTCCTGTTGCAAGGTTCCTCGCAAGTGGCAATCAGTACATTTACGCTAACACCATTCGCTTCAGCAACAGGTTAATTCTCACCTGTAAGAGTCAAAACAATGTCTTTCATGTCCAGTACTTCAAAAACGACAAGGCAGTGATTCCAAATAACACCAGTATGGGTCTGCCTAACCCCTGCCCTAATGACTACAGTTTTAGATTTGTAGTGTGTCCAGAGTATATCTGACTGCACTGAGTTACATTTGGCTACAGGTAGTTTACTACAGGCATTTCAGTCCAATCAAATCTATTAGCTTCAATCAAGCCTCTTTTTAAAAATACATGTTATTCATTTATAATCTTGAATTTTCTTGATTTGACTGAAATGTTTCACTTGACTTTAAAATTTTCATTTAATTGTTTTAGCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K17300 LGALS3BP; galectin-3-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_02503439_02516455.mRNA True 2812 mRNA 0.41 7 2502872 2516636

Neighbor

gene id symbol gene type direction distance location
CI01000112_02483013_02484955 LGALS3BPA coding upstream 17739 2483013 ~ 2485133 (+)
CI01000112_02466191_02472040 CANT1A, CANT1 coding upstream 30305 2466191 ~ 2472567 (+)
CI01000112_02454665_02459341 NA coding upstream 43531 2454630 ~ 2459341 (+)
CI01000112_02295987_02301298 NA coding upstream 200279 2295899 ~ 2302593 (+)
CI01000112_02275641_02277644 NA coding upstream 224261 2275641 ~ 2278611 (+)
CI01000112_02532994_02538052 NA coding downstream 13388 2530024 ~ 2538125 (+)
CI01000112_02541564_02549213 NA coding downstream 24314 2540950 ~ 2549444 (+)
CI01000112_02565726_02573879 TIMP2B coding downstream 48872 2565508 ~ 2574106 (+)
CI01000112_02585528_02607525 USP36 coding downstream 68293 2584929 ~ 2607668 (+)
CI01000112_02659891_02661832 NA coding downstream 143255 2659891 ~ 2662015 (+)
G329067 NA non-coding upstream 77674 2423842 ~ 2425198 (+)
G329080 NA non-coding upstream 90159 2412411 ~ 2412713 (+)
G329079 NA non-coding upstream 92152 2410495 ~ 2410720 (+)
G329025 NA non-coding upstream 219962 2282689 ~ 2282910 (+)
G329015 NA non-coding upstream 220247 2250076 ~ 2282625 (+)
G329098 NA non-coding downstream 25031 2541667 ~ 2542297 (+)
G329097 NA non-coding downstream 133738 2650374 ~ 2653361 (+)
G329145 NA non-coding downstream 255865 2772501 ~ 2772741 (+)
G329151 NA non-coding downstream 268404 2785040 ~ 2785269 (+)
G329153 NA non-coding downstream 271791 2788427 ~ 2788857 (+)
G328456 NA other upstream 1269754 1232022 ~ 1233118 (+)
G329125 NA other downstream 101068 2617704 ~ 2618151 (+)
G329194 NA other downstream 403618 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 2568084 5076817 ~ 5101845 (+)

Expression


Co-expression Network