CI01000112_02565726_02573879 (TIMP2B)


Basic Information

Item Value
gene id CI01000112_02565726_02573879
gene name TIMP2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2565508 ~ 2574106 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_02565726_02573879.mRNA
GAATAAAAAGCAGGGCCATTCACAGAGAGACCGCTATCCATTCAGACTGTCCTGACATTAGTGCGTTCTCCTCAGCAGGTTAGTCCTTTCACTCTTGTCAGTTTTTCATCTAATCCTTATTGAAGTCCACGTTTCAAAGGCAGCGTTGTCTTTGGAAGCAACTTGGTTTTGGAGACCTACGCGTTTGTTACTTGTGAAGAGTCCTCTCTGTAGTGAAGATGAGCCGCTCGCGCAGTGTTGTTCCTCTGCTGCTGTTGGTGCTGTGCGGAGCCGCAGAGTTTGCCGAAGCCTGCAGCTGCTCTCCTGAACATCCTCAGCAGGCGTATTGCAATGCGGATGTCGATCCTCTGACCTTCAGCGTCCCTACAGTACCCTGCCATTACATGACCTATGCATTTTCCATTGTCTGTAGTAGCCCTGTGATTAAAACCTATTTCAACAGGCTGATTACAACTCTAAAAATTGAGAAAGTATTGCCACATGCTAGCAACATATTGTGGTTTGTCTTTGACGTTATTGCGCATCCAATCAGACCTATAGATTCCCCCGCACGGTATTCCCCCGCGACGTACAGAACCGTCATCAGAACCAAAGTAGTCGGAAAGAAGGAGGTGGTTACCGGCAAGGATGCCTATGGCTATCCAGTCAAAATGATCCAATACGACATCAAACAGATGAAGATGTTTAAGGGCCCTGATCGAGAGATTGATACCGTCTTCACAGGCCCCTCCACAGCTTTGTGCGGGGTCAAACTTGAGAGTGATGGCAAAAAGGAGTACCTGATTACAGGTAATTTGGATTCAAATAACACATTGCGTGTAAGTCTTTGTGACTACATTGAATCTTGGGAGTCTCTGAGCATGACACAGAAAAAGTGCTTGGGTCAGCGCTATCAGATGGGCTGTGATTGCAAGGTGGTCCAGTGTTCCGTCATTCCCTGTTCCATTAGCAGCCCTACAGAATGTCTTTGGACTGACTGGGTGCTGGAGGGAACTGTTCAGGGCACTCAGGCTCAGCACTTCACCTGCGTTAAGAGGAACGACAGCAGCTGTGCCTGGTACCGTGGATCCGCCCCACCTAAAAAAGAGTTCATGGACATTGAGGACCCATAAGCTAGTTCTCTGCTTCATCACTCATTCAGAAAACACACCAAAACACAGCTACCAACTCACACCTTAATTCTGCAAATGCATTCTAGATCTCATAAAACCTGTCAAGAACATGTCTGGGCCATGAAGGGCTCACCCCAAATTCAAAGGAAAAAAAAAAGATATAAATGGTAATATTTTTTTGTAATAATAATGTAATAATGAATCATATTTTGTGTAAGAAAAAAACA

Function

symbol description
timp2b Predicted to enable metalloendopeptidase inhibitor activity and protease binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in caudal vein plexus; ovarian follicle; and vasculature. Human ortholog(s) of this gene implicated in Moyamoya disease. Orthologous to human TIMP2 (TIMP metallopeptidase inhibitor 2).

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_02565726_02573879.mRNA True 1339 mRNA 0.45 7 2565508 2574106

Neighbor

gene id symbol gene type direction distance location
CI01000112_02541564_02549213 NA coding upstream 16064 2540950 ~ 2549444 (+)
CI01000112_02532994_02538052 NA coding upstream 27383 2530024 ~ 2538125 (+)
CI01000112_02503439_02516455 LGALS3BPA, LGALS3BPB coding upstream 48872 2502872 ~ 2516636 (+)
CI01000112_02483013_02484955 LGALS3BPA coding upstream 80375 2483013 ~ 2485133 (+)
CI01000112_02466191_02472040 CANT1A, CANT1 coding upstream 92941 2466191 ~ 2472567 (+)
CI01000112_02585528_02607525 USP36 coding downstream 10823 2584929 ~ 2607668 (+)
CI01000112_02659891_02661832 NA coding downstream 85785 2659891 ~ 2662015 (+)
CI01000112_02740099_02758394 CYTH1, CYTH1A, CYH1 coding downstream 165993 2740099 ~ 2758394 (+)
CI01000112_02774549_02777028 SOCS3, SOCS3A coding downstream 199350 2773456 ~ 2778631 (+)
CI01000112_02992698_02995752 NA coding downstream 415715 2989821 ~ 2996663 (+)
G329098 NA non-coding upstream 23211 2541667 ~ 2542297 (+)
G329067 NA non-coding upstream 140310 2423842 ~ 2425198 (+)
G329080 NA non-coding upstream 152795 2412411 ~ 2412713 (+)
G329079 NA non-coding upstream 154788 2410495 ~ 2410720 (+)
G329025 NA non-coding upstream 282598 2282689 ~ 2282910 (+)
G329097 NA non-coding downstream 76268 2650374 ~ 2653361 (+)
G329145 NA non-coding downstream 198395 2772501 ~ 2772741 (+)
G329151 NA non-coding downstream 210934 2785040 ~ 2785269 (+)
G329153 NA non-coding downstream 214321 2788427 ~ 2788857 (+)
G329101 NA non-coding downstream 288979 2863085 ~ 2868729 (+)
G328456 NA other upstream 1332390 1232022 ~ 1233118 (+)
G329125 NA other downstream 43598 2617704 ~ 2618151 (+)
G329194 NA other downstream 346148 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 2510614 5076817 ~ 5101845 (+)

Expression


Co-expression Network