XLOC_011211 (zgc:194275)


Basic Information

Item Value
gene id XLOC_011211
gene name zgc:194275
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 5976683 ~ 5993452 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022394
GGAATGTGAACATGGAGGCTCAAAATGGCGAAGGTCAACACCTGTGAGCTAAAATCAGCGCCAGTGCAGAGAGATCGAGAGATTTACAGAGACGGAGGGCTGAAACTCAACTCTCAGACTATTTCAGTGGCACACAGAAGCTGGAAATAGACTCGCTGCTTGTGTGGCTTCACATCCATGTAGGAGATGCGTGAAATGACAGCGTAAGCAGATCGACACACTCAAGTGTCGAATGAAGATCTAGCGTCCGTCTATAGTGTTTTTCAGGACATTGACATCACTGCCGACACCAATGGGACTgaATAACTCTCATCTCAAGCTGTACCCCGGAGACATTCTGGAGTTTCCCGGCAACAGCTTCTTTTCTCACTATGGAATTTACTACGGTGAAAGAGACGGAGTTCCTTACGTGGCTCATCTGACCATCAGAGACTCTGACACCAGACTGCTTCTCTTCGGCCGAGCCCTGAACGCCGCAGTGAAGCTCGACCCGCTCGACGTCGTCGGAAAGAAATTCAGAGTCAAAAACTACCTGGACGACAAGCATCCTCCACGAGACTTTTACTCCATCATCAAGCCGGAGATCGAGCACAGCATGACCAAACCCGTGACCTTCGACATTCTCTTCAACAACAGCGAACATCAGGCCACCATGTTTCGAAACGGGGTCAAAAAGTCCGAGCAGATCGAAAAAGTTTATTCCAAGATAGTTCCCACCTGGAAAGACTTATTTGAGAAGAGAAAGATTTAAGAGACGCATGATGCTGAATGAAGACACAGAAACATGCTTTCTTTTGAGATTTTGCCAAAACAATGAATCAAATGAAGAGGTTGAATCATCTAAATTAAAGTGTAGCCTCATTATAATCTGTGTTTTTGTATctgaatatgttttattattttggagATGAATGTGTTATGTCCGTCTCTCTCCAGAAGATGGCAGCAGATAAAACAGGTCTGCATTGGGTTTAGAATAAACGATGTACACTGTGCCAACAAATGtcagattatttacattaaaccaACAAAATGTTGTTTGTATATTTTGTAAAACTGGGTTTAATTACTTAGAAAGAAATGTAGTAGGTTGTAGTACTGTTAGTAGTATGTAGTACTGTTTTTCCCATTTAGAACCGGATCTTAATGAGAAATTAAATGTCTCTGGTCTTATAGATTTATATAAATGTGATGTTTTTAATCTACATTTATTCATTCTAATTAACCAAAATTTGTgttaaattgtaatgtttttaaagagtgtttattaaatgtttaataaaatgactTAAATGAAATCTTGTTTTTTGGTTTTTCCACAAGTCTGAAGTTGTAATGCAG
>TCONS_00022395
TTGACATCACTGCCGACACCAATGGGACTgaATAACTCTCATCTCAAGCTGTACCCCGGAGACATTCTGGAGTTTCCCGGCAACAGCTTCTTTTCTCACTATGGAATTTACTACGGTGAAAGAGACGGAGTTCCTTACGTGGCTCATCTGACCATCAGAGACTCTGACACCAGACTGCTTCTCTTCGGCCGAGCCCTGAACGCCGCAGTGAAGCTCGACCCGCTCGACGTCGTCGGAAAGAAATTCAGAGTCAAAAACTACCTGGACGACAAGCATCCTCCACGAGACTTTTACTCCATCATCAAGCCGGAGATCGAGCACAGCATGACCAAACCCGTGACCTTCGACATTCTCTTCAACAACAGCGAACATCAGGCCACCATGTTTCGAAACGGGGTCAAAAAGTCCGAGCAGATCGAAAAAGTTTATTCCAAGATAGTTCCCACCTGGAAAGACTTATTTGAGAAGAGAAAGATTTAAGAGACGCATGATGCTGAATGAAGACACAGAAACATGCTTTCTTTTGAGATTTTGCCAAAACAATGAATCAAATGAAGAGGTTGAATCATCTAAATTAAAGTGTAGCCTCATTATAATCTGTGTTTTTGTATctgaatatgttttattattttggagATGAATGTGTTATGTCCGTCTCTCTCCAGAAGATGGCAGCAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000074014

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022394 False 1341 mRNA 0.40 5 5976683 5993452
TCONS_00022395 True 679 mRNA 0.44 4 5985933 5993061

Neighbor

gene id symbol gene type direction distance location
XLOC_011210 znf513b coding upstream 24938 5931530 ~ 5951745 (+)
XLOC_011209 fndc4b coding upstream 47741 5846202 ~ 5928942 (+)
XLOC_011208 CU929322.1 coding upstream 138989 5837308 ~ 5837694 (+)
XLOC_011207 rp1l1a coding upstream 154563 5768608 ~ 5822120 (+)
XLOC_011206 CU571310.1 coding upstream 346705 5623514 ~ 5629978 (+)
XLOC_011212 chrna2a coding downstream 86429 6079881 ~ 6101820 (+)
XLOC_011213 NA coding downstream 214707 6208159 ~ 6211272 (+)
XLOC_011214 BX000363.1 coding downstream 224252 6217704 ~ 6267717 (+)
XLOC_011215 dusp23b coding downstream 283107 6276559 ~ 6282608 (+)
XLOC_011216 CR628323.2 coding downstream 388823 6382275 ~ 6385314 (+)
XLOC_011202 FO082819.1 non-coding upstream 1106161 4870403 ~ 4870522 (+)
XLOC_011201 CABZ01016068.1 non-coding upstream 1315640 4660919 ~ 4661043 (+)
XLOC_011199 NA non-coding upstream 1483970 4489255 ~ 4492713 (+)
XLOC_011198 NA non-coding upstream 1497951 4470293 ~ 4478732 (+)
XLOC_011217 NA non-coding downstream 393188 6386640 ~ 6392567 (+)
XLOC_011220 NA non-coding downstream 534571 6528023 ~ 6528543 (+)
XLOC_011230 NA non-coding downstream 1233278 7226730 ~ 7229012 (+)
XLOC_011231 CABZ01057751.1 non-coding downstream 1326590 7320042 ~ 7320165 (+)

Expression


Co-expression Network