G327700


Basic Information

Item Value
gene id G327700
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 295133 ~ 298844 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU372488
TGCTTTTCATATAATATATCACAATTTTATTACAAAAATTAGATCTTTATCATTTTCATTAGTGCCATGCTTTTAGCATATATCAATACAGTAAAAAACCCAACCCAAAACAATAGGAGAAGCAGATATCAGCATTGATGTTGCAGCATTTGATAATTCATGCTGTTACAGTATGAATTACATTACTAGAACAGAGTCAAAACACACCAGAGCTTTAACAATAGCTGTTGAACACATTTCATAAAAACAATAATTCATCAATAAAATGAAAAAGATATTGCATAACACAATGACTAAGCAAACTAAAAGTTTGTGCTGAACTGATACATCAGCTCAAGGCACTCAGGCTGTAAGCATGTTGGCAACTAAACGACATTCTTATAGAAACATCGGTGAGATCACTGAAACAAATACAGAAAGTGCCATCCTTTTAAACCATATTTTTCCAAATAAATACATTTTTCCCCATCCTATTTTCAAGTCCATCACAGTGCAAGATCAGGTGGGCACCATTAAGTGCAGATATTAAATAAACCATCATTTAAAATGGTGACGATTTGTAATTAGGTTATCAGCAAAGTGTGTTCATTGGGAAAAAACATTATATTCTGATGCACTGTTGCTTTACTGCCCAAAATGCTGCAAAGAGACAGTTCTTCAGTTGTTGGCCCCTTCAAATAAATATATGAAGAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAAGCTAACTGTTTCCACTTGCAAAAAAAGCGGCAAAAAATATTGTAATGCTAAAAGTAACCTGGAGTAACACTGTCACTTTGAGGTTCGCAAGACAACCAACAGGAAACTATTTTATCAAGACAAAAAAAAATACAATTATTTTAGTTTTGCACAGAAATATTTAGGTATTCATAAAAAACCCAGATTTATGCTTACCTTTGAATCATTTTATCAAGAACAACAAAAAAATGAAGGACAAAGACAGACAAAAAATAGAAACATGGATCTGGCCCCATTGCAGTTCAGTTGAGCTGACGGCAGGGCTCAAAAGTCCATTTTGTGGCTCCACCAAACACATCGATATTACTCTCTGACCATGACAACACATTGCCAGCTTGTGCTCTGTTGTTGCAGGTTGCCAGGTTGTAAATTTCACCAGCTGTCAACTTTCTATCCCATATATTGAAGTTCGCCAGTTCACCTACAAAGGCTTGGGTTGCATCAAAACCTCCACCAAGTGTGTCCTGCAAGATCAAAAAACAATCAAATTCAATATCAGGTTGCTGAACAGCAGGCAAACCTGTTAAATCTAAATAAGCATGATTGATAGATTTACTACATTTTCTAATAATAATTGACATTTTCTAAATAAATTAAACCTAATAGGCATGCTTTTGAGTCTTACCTGCTCCTGACCTAAGACCAGCACACCATTGGGTTTGATTGGGTGGTAAGGTGCCAGATTTTCTCCAGTTCCACGCAGAACACCATCCTGAAAAGCTTCCCATACTCCATCACGAGTCGTCCATGTAATGCAGATGTGATGCCATTTACCATCGTTGATAATGAAAGGTAATTTTGCAACCTATCATTTATGAGAATCTCCATTGGATTGTTCCCCCATTCTATGAGAACAAGCTCATTGGCTTGTCCAGGAACAGCATAGGAGAAAGGTGTTCCTACCCCAGGTGATGCGTTGGACTTTATCCACAAGCAGAAAGAGAAGGCATACATTTCTGGTAGACTTTTTTTCACTTTGGCATACATGTAATTTGTTCTTAAGGGGAACGTTATCTGAAACTTGTCCAGTGGTCTGCTACCTTTTGAACCTGCAGAGTATAAAGTAATGACTGTTAGTATTAAACACTCAAAATAAATCTCTCTCTCTCTCTCTCTCTCTCTCTACTTTTATTCCACAAGGACTTCTAAACAAAGGCTGGTGCCTAAATGCTTCCATTGCTTGTATCAACTACTCTGGTGCTTAAGAGACTGTAATTAATAGGCTATTCTTAGACTATTCGTTGCACTACTGTAAATTACTTTTTTTTTTTTTTTTTTACACTGAACGCCATTCACTGTCCATATCCATACACTGTAAATGAAGTGGTTTTACTTACCAAACTCAAGGGTAAACCAAACAAACTTAAGGGTAAACCAAACAAACCCATGAAATAAATAAATAAAACCATTTGCATTCTTTTTATTTGTGAAACTGGTGATTGAAAAATTGGAGAAATGTGGGACTGCTTTGACTCTTGCATGCTGCGCTGAGCTGGCTGCGCTTTGAGCAACTAACTTTGCAGCTCTGCAGAGATCTACTTGCATTGAGAATGACCAAGGCTCTAATTATCCGTCATAATATTAGCCTACATCATGGTTTATTGGCTCAATATGCTAAGTAATGCAGCTCCCCCTCCCAAACCATCCTCTGCGACATTACACCGCCTAGACATTGCCGTTTTACTGTAACTACCAGCTATGCTTCTCAAACACTTAATTATTGTAGTAGCCTAGTTCAGATTTATTATTTGCATCACAAATAAGTAAAATTCCTCATGGAATGAGATCTCTTACCTTTCTCTAGGTCGTTAATTCTCTGATGTAAGGAGGTGAGAGTTGACTCTACTCGATTGCGCTGATCCGTGTTGTTCCTCTGCCCGGGTTTGCTCTCCTCCATAGTACTGACCCGGGACAGCACCTGCTTCTCCATATCATCAATCTTATTTTGAAGCAGATCTTTAAGGCTGTTCGCCTGGACAGAACCGTTGTTTCTGCTGTACTGCTACAGGAAAACAGAAGATAGCAGGGTGCTTATTCAAACGAACAGTAAAACGCACGCATGGGAAACTTGTGAGACTAGATAAGCCAATTTCAGGCTTAGCGCAGCCTGCCGTGAAACAGTTACACATTGACTAAATCTGTAAAAGGCCTCCATATAAGTCGACCCCATTAAGATTACTCAGTCTGGCTTAAAATCTATTAACGTAAAGTAATTTATCATGCATTGTATGAGTTTGTGTATTTAAAGAACTGTGGGATATGACCATTAGGACTGTCACACGTCTTTAACTGAAAAGTCCAAATCATGCATACCTCCAAGTTTTCTAATCTCTGTTTAAGGGTGGCTAAAGTCTGCCCGAGTTGGGTTAGAGTATCTGTCGGGCCGCGGGACACGTCTCCCATCGTGTTTTTGCCCGGTTCTTTCCTACGACCAGTCACGGGCTCCAGAACATTCTGACTCTCACAGCGGCTCAACTTGGAAGTTAGTTCCCTGATCGTCTCCTTTTGATTCATAATAGTTTCCTTCTGCTGCAGCACTGTCTCTCTTAACTGCATTACTGTGGTCTTCAGATCCTCTGCTGGCCCGCTGTTCTGCATAGTGGCTGCGCACAGGTCCATATCCTTAGGCACGGACGTGCAGATGAACTGTGTCTGTCCGAAATCTTGCGAAGATCCCTCCCAATATGTAAGAGAAAGTAGAAAAAGTGTCCATGAGATTCTCTCCATTGCGGATTGTCTTCTTTGTCAGTGTTTAAAGTGTGAGTAACGTATTGTTTCACCACCACAGAGCTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372488 True 3562 lncRNA 0.39 2 295133 298844

Neighbor

gene id symbol gene type direction distance location
CI01000112_00220804_00222613 NA coding upstream 72474 220664 ~ 222659 (+)
CI01000112_00071976_00072854 NA coding upstream 222017 71976 ~ 73116 (+)
CI01000112_00059545_00061349 NA coding upstream 233397 59099 ~ 61736 (+)
CI01000112_00379383_00617969 RPTOR coding downstream 80539 379383 ~ 617969 (+)
CI01000112_00627027_00637276 NA coding downstream 328183 627027 ~ 637276 (+)
CI01000112_00655682_00669456 P4HB coding downstream 355935 654779 ~ 669948 (+)
CI01000112_00672164_00673174 PPP1R27, PPP1R27B coding downstream 373095 671939 ~ 673882 (+)
CI01000112_00704149_00718204 CCDC40 coding downstream 405305 704149 ~ 718231 (+)
G327779 NA non-coding upstream 187086 106831 ~ 108047 (+)
G327777 NA non-coding upstream 193177 101722 ~ 101956 (+)
G327776 NA non-coding upstream 193569 101239 ~ 101564 (+)
G327772 NA non-coding upstream 196982 97545 ~ 98151 (+)
G327771 NA non-coding upstream 197594 97029 ~ 97539 (+)
G327866 NA non-coding downstream 13791 312635 ~ 313108 (+)
G327868 NA non-coding downstream 20425 319269 ~ 319523 (+)
G327876 NA non-coding downstream 43821 342665 ~ 342972 (+)
G327708 NA non-coding downstream 166840 465684 ~ 473895 (+)
G327892 NA non-coding downstream 379927 678771 ~ 678990 (+)
G328456 NA other downstream 933178 1232022 ~ 1233118 (+)
G329125 NA other downstream 2318860 2617704 ~ 2618151 (+)
G329194 NA other downstream 2621410 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 4785876 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G43940 nptx1,LOC107750979,LOC107701212 non-coding NC_056704.1 CM032073.1 9775637 ~ 9782041 (+)