Gene
RNA
| Item | Value |
|---|---|
| gene id | G327866 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 312635 ~ 313108 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU372658 | True | 474 | lncRNA | 0.44 | 1 | 312635 | 313108 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000112_00220804_00222613 | NA | coding | upstream | 89976 | 220664 ~ 222659 (+) |
| CI01000112_00071976_00072854 | NA | coding | upstream | 239519 | 71976 ~ 73116 (+) |
| CI01000112_00059545_00061349 | NA | coding | upstream | 250899 | 59099 ~ 61736 (+) |
| CI01000112_00379383_00617969 | RPTOR | coding | downstream | 66275 | 379383 ~ 617969 (+) |
| CI01000112_00627027_00637276 | NA | coding | downstream | 313919 | 627027 ~ 637276 (+) |
| CI01000112_00655682_00669456 | P4HB | coding | downstream | 341671 | 654779 ~ 669948 (+) |
| CI01000112_00672164_00673174 | PPP1R27, PPP1R27B | coding | downstream | 358831 | 671939 ~ 673882 (+) |
| CI01000112_00704149_00718204 | CCDC40 | coding | downstream | 391041 | 704149 ~ 718231 (+) |
| G327700 | NA | non-coding | upstream | 13791 | 295133 ~ 298844 (+) |
| G327779 | NA | non-coding | upstream | 204588 | 106831 ~ 108047 (+) |
| G327777 | NA | non-coding | upstream | 210679 | 101722 ~ 101956 (+) |
| G327776 | NA | non-coding | upstream | 211071 | 101239 ~ 101564 (+) |
| G327772 | NA | non-coding | upstream | 214484 | 97545 ~ 98151 (+) |
| G327868 | NA | non-coding | downstream | 6161 | 319269 ~ 319523 (+) |
| G327876 | NA | non-coding | downstream | 29557 | 342665 ~ 342972 (+) |
| G327708 | NA | non-coding | downstream | 152576 | 465684 ~ 473895 (+) |
| G327892 | NA | non-coding | downstream | 365663 | 678771 ~ 678990 (+) |
| G327893 | NA | non-coding | downstream | 366124 | 679232 ~ 679470 (+) |
| G328456 | NA | other | downstream | 918914 | 1232022 ~ 1233118 (+) |
| G329125 | NA | other | downstream | 2304596 | 2617704 ~ 2618151 (+) |
| G329194 | NA | other | downstream | 2607146 | 2920254 ~ 2931889 (+) |
| CI01000112_05076817_05101845 | NA | other | downstream | 4771612 | 5076817 ~ 5101845 (+) |
