G327899


Basic Information

Item Value
gene id G327899
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 683399 ~ 683611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU372696
AGCTTTGCTCTGTCCCGTCCGCGCTCTGCGCCTGTACGTGGACAGAACGCGAAGTTTCAGGACCTCAGATCAGCTCTTTGTCTGTTACGGAGGCCAGCAGAAGGGAAAGGCTGTCTCCAAGCAGAGGATGGCCCACTGGATAGTGGATGCCATCGCCCTGGCGTATGAATCCCAGGGCGTGCCTTGCCCGCTCGGGTTGAGAGCACACTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372696 True 213 lncRNA 0.60 1 683399 683611

Neighbor

gene id symbol gene type direction distance location
CI01000112_00672164_00673174 PPP1R27, PPP1R27B coding upstream 9517 671939 ~ 673882 (+)
CI01000112_00655682_00669456 P4HB coding upstream 13451 654779 ~ 669948 (+)
CI01000112_00627027_00637276 NA coding upstream 46123 627027 ~ 637276 (+)
CI01000112_00379383_00617969 RPTOR coding upstream 65430 379383 ~ 617969 (+)
CI01000112_00220804_00222613 NA coding upstream 460740 220664 ~ 222659 (+)
CI01000112_00704149_00718204 CCDC40 coding downstream 20538 704149 ~ 718231 (+)
CI01000112_00727125_00743789 NA coding downstream 43473 727084 ~ 743999 (+)
CI01000112_00779771_00783376 CBX4 coding downstream 95762 779373 ~ 783522 (+)
CI01000112_00789475_00790952 CBX8 coding downstream 105145 788756 ~ 791433 (+)
CI01000112_00796321_00806383 DGKE coding downstream 112578 796189 ~ 807227 (+)
G327894 NA non-coding upstream 3674 679484 ~ 679725 (+)
G327893 NA non-coding upstream 3929 679232 ~ 679470 (+)
G327892 NA non-coding upstream 4409 678771 ~ 678990 (+)
G327708 NA non-coding upstream 209504 465684 ~ 473895 (+)
G327876 NA non-coding upstream 340427 342665 ~ 342972 (+)
G327900 NA non-coding downstream 271 683882 ~ 684162 (+)
G327905 NA non-coding downstream 4934 688545 ~ 688764 (+)
G327675 NA non-coding downstream 9589 693200 ~ 696619 (+)
G327705 NA non-coding downstream 66366 749977 ~ 812146 (+)
G327949 NA non-coding downstream 221476 905087 ~ 905301 (+)
G328456 NA other downstream 548411 1232022 ~ 1233118 (+)
G329125 NA other downstream 1934093 2617704 ~ 2618151 (+)
G329194 NA other downstream 2236643 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 4401109 5076817 ~ 5101845 (+)

Expression


Co-expression Network