XLOC_011223 (BX005321.1)


Basic Information

Item Value
gene id XLOC_011223
gene name BX005321.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 6625717 ~ 6666849 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022409
GATTTGGAAGTGTAATTCAGTCCAAACCTGCCTGGAACTATTTCAGCTTTGTGTTTTCTGACCACAGAATGTTaaccagccaatcagaaacaaGCATTCCTGTTGTATATATGTAATTCTAGATTTTGCAATACAACCTTTTTAGTAAAAGACTAACCAAAATTGCGTTCTTGTGCAGAGAGACAGCAAGAAATCGACGCAAACTGATGGAATTGGGAGTCACCCATATCCTAAATGCAGCAGCGCCGAAGATGACCTGGGAGGGAAAACCAAAGAAGAAAGGACTAAAAGGAAAGATTCTTACAGGACCGGAATATTATGAAGGCATGGACATCAAATATTGTGGCTTGCCTACAACATACGACCAAATGCGAATCGTCAAATACTTCTGGCCTGCTGGAAAGTTCATCGCAAAGGCCCTGAGAAAGCCAGACAATGTCCTGTTTATTCATTGCAAGCATGGTGTCAGTCACGCGCCAACACTGTTTGTAGCATATCTGATGATGTACTACAAACTACCTCTGGAGGAAGCCATTGGTTATGTGACCAGGGCGAGGCGCATCAGGCCCTTCTCATCCTTTCTGCTCCAGTTGTTGTTACTCGAACCTACGAAAAAGACAAGGAAAAGGAGAGTAATCAGAAAGCAAAAAGGCATTGTAATATACaactaagaaaataaaataaactgaactaCAAGATGGCTGCCGCACACTgaaagaatgttgctggtttgagtcccacaCAGAAAGGCCTCCTGGAAACCTGGGACTCAAATCACATACCTTAACCCTTACCTACTtttattattcagttttattattgtttgtttttttatctctGGATGTctgtgcactttaaaaaaatgcttttcagaTTGAGCTAGAAAAACAGCATAGAGCACAGGGCTGCAAGATGGCTAAATGTTAGCCGCACAGATAGAAGGGCGCTGGATCGAGTCCCACACAGAAAGACCTCCTGGTCTAGTcaggactcaaactagtgaccctAGCCCtcacctattttttattttcagctttctGTTTTATCTCTGGATATatgtgcactttaaaaaatgcttttcagaTTAAGTAAGAAATACAATACATTTCTTGCTTAAAGCCCCAGTGGCGGACGAGTCTCTGCGAGTCTCTGTAggtcaggggtgctcaaactcggTCCCGGaaagctggtgtcctgcatattttacttccaaccccaattaagcacacctgaaccagctaatcaagctctttctaggtgttctagaaacttccaggcaagtgTTTTGAAGGAAGTTAGGGCTAATCTATGCAGGagaccagccctccaggactgagtttgaacacccctgctgtagatgatctactcacacctgcagcttctctaaGATGGACGTCCAGCcaccggtgcctagactgcagctctgcacaagatgtttggccataggagaaatggtcgtgcccaactgagcctggtttctctcgaggtttttttccttcacttttgtcattcagtgaagttttgttcctcgccactgtcgccactggcttgcttggtttgggacttgtggagctgtgtgTCGTTAGATTAACTCTTCAGTGTTCGGccttttaaaccacactgaaatgaactaaactgaaattcaacttcaaaaactggactgacacagtttcaatttacgaGAACTTCTATGTTAACTGTGTTTATCTGTGCACTTAAAAAGTACTTATTGTGCAAAAAATGCGATTAATCAGAGCATAGATTCAACTTTGCacataaaaaagtaatttttttatacatttttaaactttattttagaaTTTAGAGGATgcactttccaaaaaaaaaagtcacagctTAGATTGAGTTAAAACCAAGTGTCAGTATACATAAGCGTTAGAGAAAAGAATAAGCCCCACTTGGCTCCCTTTTCTCTATGGATACCACTCTTCTGGCTACGCCTTGTTGCTCCATCCTGCTGGCTTTGGTTTGGAGATCGGAGGTGATGACTCCCAACCGACTAAGTAGTGTAACTCCCAAAATGGGACCAGCTGCAGGCATGAGACCAATCAAGTGTTCCAGCTCAAGTAATAAACTGACACATGCGTAGCAGAAGAGGGAGGGCTGGGTGGGCCAACTaactcaaaattatatattttgttcaaattttatttttctgtagaaaatttatattttaggatattttttttaaattgaattagctaaattgtctgtagtgtatgagtgtgaatgagtgtgtatgggtgtttcccagagatgggttgctgctggaagggcatctgctgtttaaaacatatgctggataagttggcggttcattctgctgtggcgaccccagattaacaagggcactaagccaaaaagaaaatgaatgaacgaatgatttatttttctgttaaagctATGCTCTGATTGAGTGCACATAAAATCAGATACTCATTGTTTTCTCTGCTCTGTGCTGTGATTTATTTTCACTCTGTTTATTCCATTTATTGTAACTGTGCCGACTGTAAAAAGTGTTCTTTCATTGTTTTTGTATTGTac
>TCONS_00022410
GATTTGGAAGTGTAATTCAGTCCAAACCTGCCTGGAACTATTTCAGCTTTGTGTTTTCTGACCACAGAATGTTaaccagccaatcagaaacaaGCATTCCTGTTGTATATATGTAATTCTAGATTTTGCAATACAACCTTTTTAGTAAAAGACTAACCAAAATTGCGTTCTTGTGCAGAGAGACAGCAAGAAATCGACGCAAACTGATGGAATTGGGAGTCACCCATATCCTAAATGCAGCAGCGCCGAAGATGACCTGGGAGGGAAAACCAAAGAAGAAAGGACTAAAAGGAAAGATTCTTACAGGACCGGAATATTATGAAGGCATGGACATCAAATATTGTGGCTTGCCTACAACATACGACCAAATGCGAATCGTCAAATACTTCTGGCCTGCTGGAAAGTTCATCGCAAAGGCCCTGAGAAAGCCAGACAATGTCCTGTTTATTCATTGCAAGCATGGTGTCAGTCACGCGCCAACACTGTTTGTAGCATATCTGATGATGTACTACAAACTACCTCTGGAGGAAGCCATTGGTTATGTGACCAGGGCGAGGCGCATCAGGCCCTTCTCATCCTTTCTGCTCCAGTTGTTGTTACTCGAACCTACGAAAAAGACAAGGAAAAGCAGAGTAATCAGAAAGCAAAAAGGCATTGTAATATACaactaagaaaataaaaataaactgaactaCAAGATGGCTGCCGCACACTgaaagaatgttgctggtttgagtcccacaCAGAAAGGCCTCCTGGAAACCTGGGACTCAAATCACATACCTTAGCCCTAACCTACTtttattattcagttttattattgtttgttttttatctcTGGATGTCTgtgcacttttaaaaaaatgcttttcagaTTGAGCTAGAAAAACAGCATAGAGCACAGGGCTGCAAGATGGCTAAACGTTAGCTTCACAGATAGAAGGGCGCTGGATCGAGTCCCACACAGAAAGACCTCCTGGTCTAGTcaggactcaaactagtgaccctAGCCCtcacctattttttattttcagctttctGTTTTATCTCTGGATATatgtgcactttaaaaaatgcttttcagaTTAAGTAAGAAATACAATACATTTCTTGCTTAAAGCCCCAGTGGCGGACGAGTCTCTGCGAGTCTCTGTAggtcaggggtgctcaaactcggTCCCGGaaagctggtgtcctgcatattttacttccaaccccaattaagcacacctgaaccagctaatcaagctctttctaggtgttctagaaacttccaggcaagtgTTTTGAAGGAAGTTAGAGCTAATCTATGCAGGagaccagccctccaggactgagtttgaacacccctgctgtagatgatctactcacacctgcagcttctctaaGATGGACGTCCAGCcaccggtgcctagactgcagctctgcacaagatgtttggccataggagaaatggtcgtgcccaactgagcctggtttctctcgaggtttttttccttcacttttgtcattcagtgaagttttgttcctcgccactgtcgccactggcttgcttggtttgggacttgtggagctgtgtgTCGTTAGATTAACTCTTCAGTGTTCGGccttttaaaccacactgaaatgaactaaactgaaattcaacttcaaaaactggactgacacagtttcaatttacgaGAACTTCTATGTTAACTGTGTTTATCTGTGCACTTAAAAAGTACTTATTGTgcaaaaaatgtgattaatcagAGCATAGGTTCAACTTTGCacttaaaaaagttaattttttatacatttttaaattttattttagaatttagaTGGTGCactttccaaaaataaaaagtcactgCTTAGATTGAGTTAAAACCAAGTGTCAGTATCCATAAGCGTTAGAGAAAAGAATAAGCCCCACTTGGCTCCCTTTTCTCTATGGATACCACTCTTCTGGCTACGCCTTGTAGCTCCATCCTGCTGGCTTTGGTTTGGAGATCGGAGGTGATGACTCCCAACCGACTAAGTAGTGTAACTCCCAAAATGGGACCAGCTGCAGGCATGGGGCCAATCAAGTGTTCCAGCTCAAGTAATGAACTGACACATGCgttttattatgtttagaaatgtgttggaaaaaaaatctgctctccgttagacagaaaatggggaaaaaaataaacaggggggctaataaatttgacttcaactgtatatcaaggTGTCTGCCGGGtcttaaaaaagtattaaaagttgagaaatgaatgtagagaaatgtaaggctcttaaaaagtatttaaaagtcttaaatgctattttgcaatgtattaaattttatatCTTTTTTGATTATGCAGTGTATGGTTGTCTGCTaaagttaaatctaccaaatctgccaatatcaggatgctgtgtagtttatgaaatcaatgaaatcctacttgatttgacatcatgctgctttgttactgcagtaaccaag
>TCONS_00024588
TgcactttccaaaaaaaaaaagtcactgctTAGATTGAGTTAAAACCAAGTGTCAGTATCCATAAGCGTTAGAGAAAAGAATAAGCCCCACTTGGCTCCCTTTTCTCTATGGATACCACTCTTCTGGCTACGCCTTGTTGCTCCATCCTGCTGGCTTTGGTTTGGAGATCGGAGGTGATGACTCCCAACCGACTAAGTAGTGTAACTCCCAAAATGGGACCAGCTGCAGGCATGGGACCAATCAAGTGTTCCAGCTCAAGTAATAAACTGACACATGCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000112213

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022409 False 2565 mRNA 0.41 2 6625717 6639578
TCONS_00022410 False 2482 mRNA 0.41 2 6625717 6666849
TCONS_00024588 True 279 lncRNA 0.46 2 6627628 6639120

Neighbor

gene id symbol gene type direction distance location
XLOC_011222 adgrf3a coding upstream 27888 6563307 ~ 6597829 (+)
XLOC_011221 slc5a6b coding upstream 67121 6535694 ~ 6558596 (+)
XLOC_011220 NA coding upstream 97174 6528023 ~ 6528543 (+)
XLOC_011219 coq8ab coding upstream 137904 6467398 ~ 6487813 (+)
XLOC_011218 TATDN3 coding upstream 163129 6452511 ~ 6462588 (+)
XLOC_011224 smc6 coding downstream 592 6667441 ~ 6746046 (+)
XLOC_011225 afg1la coding downstream 98772 6765621 ~ 6789670 (+)
XLOC_011226 foxo3a coding downstream 126152 6793001 ~ 6810785 (+)
XLOC_011227 ccdc162 coding downstream 155488 6822337 ~ 6826156 (+)
XLOC_011228 si:ch73-242m19.1 coding downstream 161701 6828550 ~ 6932061 (+)
XLOC_011217 NA non-coding upstream 233150 6386640 ~ 6392567 (+)
XLOC_011213 NA non-coding upstream 414445 6208159 ~ 6211272 (+)
XLOC_011208 CU929322.1 non-coding upstream 788023 5837308 ~ 5837694 (+)
XLOC_011202 FO082819.1 non-coding upstream 1755195 4870403 ~ 4870522 (+)
XLOC_011230 NA non-coding downstream 559881 7226730 ~ 7229012 (+)
XLOC_011231 CABZ01057751.1 non-coding downstream 653193 7320042 ~ 7320165 (+)
XLOC_011232 NA non-coding downstream 779660 7446509 ~ 7446781 (+)
XLOC_011238 BX511121.2 non-coding downstream 994359 7661208 ~ 7661324 (+)
XLOC_011239 BX088649.1 non-coding downstream 1074767 7741616 ~ 7747160 (+)

Expression


Co-expression Network