Fish Transcriptome and Expression Database

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model fish

XLOC_011231 (CABZ01057751.1)

Basic Information

Item	Value
gene id	XLOC_011231
gene name	CABZ01057751.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	7320042 ~ 7320165 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022422
ActgggacccattgacttccGCAAGCTCTCtccaactctcacatggttgacCACTAAAGCCAAGCAGGGCtacgcctggtcagtacctggatgggagaccacatgggaaagctaggttgcggTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084065

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00022422	True	124	rRNA	0.56	1	7320042	7320165

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_011230	NA	coding	upstream	91030	7226730 ~ 7229012 (+)
XLOC_011229	zgc:172341	coding	upstream	348096	6956696 ~ 6971946 (+)
XLOC_011228	si:ch73-242m19.1	coding	upstream	387981	6828550 ~ 6932061 (+)
XLOC_011227	ccdc162	coding	upstream	493886	6822337 ~ 6826156 (+)
XLOC_011226	foxo3a	coding	upstream	509257	6793001 ~ 6810785 (+)
XLOC_011232	NA	coding	downstream	126344	7446509 ~ 7446781 (+)
XLOC_011233	klhl10b.1	coding	downstream	190055	7510220 ~ 7521586 (+)
XLOC_011234	klhl10b.2	coding	downstream	202612	7522777 ~ 7531632 (+)
XLOC_011235	shprh	coding	downstream	214015	7534180 ~ 7589306 (+)
XLOC_011236	si:dkeyp-110a12.4	coding	downstream	275191	7595356 ~ 7617558 (+)
XLOC_011220	NA	non-coding	upstream	791499	6528023 ~ 6528543 (+)
XLOC_011217	NA	non-coding	upstream	927475	6386640 ~ 6392567 (+)
XLOC_011213	NA	non-coding	upstream	1108770	6208159 ~ 6211272 (+)
XLOC_011208	CU929322.1	non-coding	upstream	1482348	5837308 ~ 5837694 (+)
XLOC_011238	BX511121.2	non-coding	downstream	341043	7661208 ~ 7661324 (+)
XLOC_011239	BX088649.1	non-coding	downstream	421451	7741616 ~ 7747160 (+)
XLOC_011242	BX927406.1	non-coding	downstream	770192	8090357 ~ 8090474 (+)
XLOC_011246	NA	non-coding	downstream	905490	8225655 ~ 8229883 (+)

Expression

Co-expression Network