G328988


Basic Information

Item Value
gene id G328988
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2181408 ~ 2181633 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU373942
TAAACATTTGTTATGTTATCTATGTTCTATTGTGAATAAAATATTGGCTCATGTGATTTGAAAGTCTTTTAGTTTTCATTTTATTCAAATTTAAAAAACGTCCCAACATTTCCGGAATTTGGGTTGTATAAAGTGGGACCCAGGTTAGACACATTTCACTTGTTTGTTTGTGTCTAATGTTACAAAATACTTCAAATTTATTTCAAAACATGCTGTTGTTTTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373942 True 226 lncRNA 0.28 1 2181408 2181633

Neighbor

gene id symbol gene type direction distance location
CI01000112_02109843_02114079 CDR2A coding upstream 66845 2109843 ~ 2114563 (+)
CI01000112_02060950_02068272 UNM_SA1261 coding upstream 112804 2060721 ~ 2068604 (+)
CI01000112_02017278_02032299 U2AF2 coding upstream 148995 2017278 ~ 2032413 (+)
CI01000112_01883455_01914770 NA coding upstream 266633 1883244 ~ 1914775 (+)
CI01000112_01865388_01878028 LUC7L3 coding upstream 303220 1865101 ~ 1878188 (+)
CI01000112_02207728_02210655 NA coding downstream 26057 2207690 ~ 2210957 (+)
CI01000112_02240184_02240792 C16ORF52 coding downstream 56036 2237669 ~ 2241243 (+)
CI01000112_02261335_02262540 NH2L1, SNU13.S, BRAFLDRAFT_68109, SNU13.L, SNU13B, SNU13, SNU13A coding downstream 79702 2261335 ~ 2262781 (+)
CI01000112_02275641_02277644 NA coding downstream 94008 2275641 ~ 2278611 (+)
CI01000112_02295987_02301298 NA coding downstream 114266 2295899 ~ 2302593 (+)
G328987 NA non-coding upstream 37 2181028 ~ 2181371 (+)
G328986 NA non-coding upstream 491 2180663 ~ 2180917 (+)
G328984 NA non-coding upstream 7880 2173268 ~ 2173528 (+)
G328973 NA non-coding upstream 30697 2150370 ~ 2150711 (+)
G328965 NA non-coding upstream 37381 2143529 ~ 2144027 (+)
G328989 NA non-coding downstream 1271 2182904 ~ 2183442 (+)
G328926 NA non-coding downstream 60239 2241872 ~ 2243184 (+)
G328925 NA non-coding downstream 61735 2243368 ~ 2248408 (+)
G329015 NA non-coding downstream 68443 2250076 ~ 2282625 (+)
G329025 NA non-coding downstream 101056 2282689 ~ 2282910 (+)
G328456 NA other upstream 948290 1232022 ~ 1233118 (+)
G329125 NA other downstream 436071 2617704 ~ 2618151 (+)
G329194 NA other downstream 738621 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 2903087 5076817 ~ 5101845 (+)

Expression


Co-expression Network