G328925


Basic Information

Item Value
gene id G328925
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2243368 ~ 2248408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU373869
TAAGTCTTCCTTCAGCCACAGCCGTCACCTGTGCGGTGGCCTTGGCGATGCCCTGACTGAGTTTGCTGGTGATGTTGGATCCTCTCTTGACGTGCGGTCCAGCACCCAGAAGCCTCTGCAGCACGCTGAAGGCGTTGGCCTCCGCTGAGCCCGTCACGGCTCCTTCGCAGGCCAGCAGCGCATGAACCAGCCCTCCACCGCTCTGCACCCGCAGCTCACCTGCAGCGCACAAACACCGTTCACTCAGTCAA
>TU373870
ATACACTCCAAAGAGCCCAGAGTCAGAGTATGTGGCACTGAAAGCCGTGGCATCAAACGGCTGTGCGGTGGCCTTGGCGATGCCCTGACTGAGTTTGCTGGTGATGTTGGATCCTCTCTTGACGTGCGGTCCAGCACCCAGAAGCCTCTGCAGCACGCTGAAGGCGTTGGCCTCCGCTGAGCCCGTCACGGCTCCTTCGCAGGCCAGCAGCGCATGAACCAGCCCTCCACCGCTCTGCACCCGCAGCTCACCGCCGCGGTAAACAGCTTGAGCTCCTGGTGTGCCGGCCCCTGTGTGTCCACTGAAGAACTGCTCTCCCACCTTCCTCAGAGCAGCATGACTGACTCCTAATCCAACGAGAGCCATTCTGGCACTGGTGTAATTATTCGCAAAGAACCGTTGCAGATGATCAATACTGATCTTCCCCAGCATGTGGTCTGGACAGTACAGTGAGTTGGATAAAGCGTTCTTATATGCAGCTTCATGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU373869 False 251 lncRNA 0.62 2 2243368 2246361
TU373870 True 489 lncRNA 0.57 5 2245982 2248408

Neighbor

gene id symbol gene type direction distance location
CI01000112_02240184_02240792 C16ORF52 coding upstream 2125 2237669 ~ 2241243 (+)
CI01000112_02207728_02210655 NA coding upstream 32411 2207690 ~ 2210957 (+)
CI01000112_02109843_02114079 CDR2A coding upstream 128805 2109843 ~ 2114563 (+)
CI01000112_02060950_02068272 UNM_SA1261 coding upstream 174764 2060721 ~ 2068604 (+)
CI01000112_02017278_02032299 U2AF2 coding upstream 210955 2017278 ~ 2032413 (+)
CI01000112_02261335_02262540 NH2L1, SNU13.S, BRAFLDRAFT_68109, SNU13.L, SNU13B, SNU13, SNU13A coding downstream 12927 2261335 ~ 2262781 (+)
CI01000112_02275641_02277644 NA coding downstream 27233 2275641 ~ 2278611 (+)
CI01000112_02295987_02301298 NA coding downstream 47491 2295899 ~ 2302593 (+)
CI01000112_02454665_02459341 NA coding downstream 206222 2454630 ~ 2459341 (+)
CI01000112_02466191_02472040 CANT1A, CANT1 coding downstream 217783 2466191 ~ 2472567 (+)
G328926 NA non-coding upstream 184 2241872 ~ 2243184 (+)
G328989 NA non-coding upstream 59926 2182904 ~ 2183442 (+)
G328988 NA non-coding upstream 61735 2181408 ~ 2181633 (+)
G328987 NA non-coding upstream 61997 2181028 ~ 2181371 (+)
G328986 NA non-coding upstream 62451 2180663 ~ 2180917 (+)
G329015 NA non-coding downstream 1668 2250076 ~ 2282625 (+)
G329025 NA non-coding downstream 34281 2282689 ~ 2282910 (+)
G329079 NA non-coding downstream 162087 2410495 ~ 2410720 (+)
G329080 NA non-coding downstream 164003 2412411 ~ 2412713 (+)
G329067 NA non-coding downstream 175434 2423842 ~ 2425198 (+)
G328456 NA other upstream 1010250 1232022 ~ 1233118 (+)
G329125 NA other downstream 369296 2617704 ~ 2618151 (+)
G329194 NA other downstream 671846 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 2836312 5076817 ~ 5101845 (+)

Expression


Co-expression Network