XLOC_011233 (klhl10b.1)


Basic Information

Item Value
gene id XLOC_011233
gene name klhl10b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7510220 ~ 7521586 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022423
atgcagtcctgcaagctcatgatggagtcagacacaatattcatctttttccactgcaTGATAATGGAGAACTTTAACAGTCCCACAGCTTCAAATGTGTTTGATGAAGCACGTTTACTGGGCGAACACACTGACCTGATCATCAGGGCGAATGGCACTAAATTTCAAGTGCACAAGATCATCATGTGTGCCTGCAGCCCTTATTTTAGGGTACTGTTCTCCTCCAAATGGACCAGCACAGCTGAGCATACCTACGACATCCCAGAAATGTCTCCAGACATCTTATATCTCATTATTCAGTACGCATACACAAGATCTGCGCTCATTACAGCAGAGAACGTGTTGAAGCTGTTAGTGACAGCTGATCAGCTCTTAATCTCGGGTCTCGTCGCTGCCTGCTGTCAGTTTCTGGACACACACTTAGGTCCAGAGAACTGCATTGGCATCCACATGATTACCAAGGACTTTCACTCCTGCTCAAAGCTCCACCATAAAGCGAAGCGGTTCATACTGCAGCACTTTGAGAACGTGCTGCAAGTGTCTGAGGAGTTCCTGGAGCTCCCGCTGGAGGAGCTTGAGGAGATCATTGATGATGATAAACTCAACGTCAGACATGAGGAGGTGGTTTTTGAGGCCATCCTTCACTGGATTGATCATGAACCAGAAAGCAGGAGGAAACACATTGCGACTCTTTTGCCAAAGGTTCGACTGGGACTGATGACGTTACAATACTTCATGGATAATGTAAAGCACAACCCGCTGGTGATGGAGAATGAAGCCTGCAAGCCTATAATCCTCAGCGCTATGAAGGCCTTATTCGACTTTCAGTTTGATGGACCAATAAGCTCAGAGCTCCTACATCGACTGACCCGCCCTCGTCTGCCTTCTGCAATCCTATTGGCCATCGGAGGATGGAGCAATGGGCCAACTAATGAGATTGAAGCGTTTGATATGAGGGCGGAGCAGTGGGTCAATGTGAATAAAGTGGACGAGCGGTCCACAGCATATCTTGGCACTGCAGTTCTGGAGGAGTTTGTTTACTGCATTGGTGGTTATGACAGTGTGGAGTATTTCAACAACGTCAGAAAATTCAACCTCATCACACAGACTTGGCATGAGGTGGCCCCCATGTATGAGCGGAGATGCTATGTCAGTGTTGCTGTCCTGGATGGACTTATTTATGCCATCGGTGGCTTTGATGGACTTGAACGGCTGAATTCAGCTGAATGTTATAATCCAGACACCAACCAGTGGACACTCACAGCACAGATGAACGAACGCAGAAGTGACGCTAGCGCCAGCTCACTGCAGGGCAAGGTTTACATCTGTGGTGGTTTTACCGGGACAGAGTGTCTCTTCTCAGCCGAATGCTTCAACCCTCAGACAAACCAGTGGACGCTCATTGCTCCGATGAGAAGCCGCCGCAGTGGTCTTGGTGTGATCGCATATGATGGTCTGGTTTATGCTgttGGTGGTTTTGATGGTGCCAGTCGCTTGCGGACTGCAGAGGCCTACAATCCACTGACTAACATGTGGAGGGATGTTGCATCTATGCACAAAACACGCAGCAACTTTGGCATTGAGGTGGTTGATGATCAGTTGTTTGCAGTCGGAGGATTCGACGGATCGGGCACCATCTCTGATGTGGACTGTTACGATGTGGAGATGGATGAATGGTATTCGGTAAACAAGGCGTCGATCTCTCGCAGTGCTCTGAGCTGTTGTGTAGCGACAGGATTGCCGAACATCATACAATACGTGGCCCAGCGAGACGCAGTCCAGATACAAGACGAGTCTGACAATGAATGA
>TCONS_00022424
ATGACCAATTACGGAATTGAAGTGACTGAAGCAGCAGAGAAGGTCACCATGCATGCAATGATAATGGAGAACTTTAACAGTCCCACAGCTTCAAATGTGTTTGATGAAGCACGTTTACTGGGCGAACACACTGACCTGATCATCAGGGCGAATGGCACTAAATTTCAAGTGCACAAGATCATCATGTGTGCCTGCAGCCCTTATTTTAGGGTACTGTTCTCCTCCAAATGGACCAGCACAGCTGAGCATACCTACGACATCCCAGAAATGTCTCCAGACATCTTATATCTCATTATTCAGTACGCATACACAAGATCTGCGCTCATTACAGCAGAGAACGTGTTGAAGCTGTTAGTGACAGCTGATCAGCTCTTAATCTCGGGTCTCGTCGCTGCCTGCTGTCAGTTTCTGGACACACACTTAGGTCCAGAGAACTGCATTGGCATCCACATGATTACCAAGGACTTTCACTCCTGCTCAAAGCTCCACCATAAAGCGAAGCGGTTCATACTGCAGCACTTTGAGAACGTGCTGCAAGTGTCTGAGGAGTTCCTGGAGCTCCCGCTGGAGGAGCTTGAGGAGATCATTGATGATGATAAACTCAACGTCAGACATGAGGAGGTGGTTTTTGAGGCCATCCTTCACTGGATTGATCATGAACCAGAAAGCAGGAGGAAACACATTGCGACTCTTTTGCCAAAGGTTCGACTGGGACTGATGACGTTACAATACTTCATGGATAATGTAAAGCACAACCCGCTGGTGATGGAGAATGAAGCCTGCAAGCCTATAATCCTCAGCGCTATGAAGGCCTTATTCGACTTTCAGTTTGATGGACCAATAAGCTCAGAGCTCCTACATCGACTGACCCGCCCTCGTCTGCCTTCTGCAATCCTATTGGCCATCGGAGGATGGAGCAATGGGCCAACTAATGAGATTGAAGCGTTTGATATGAGGGCGGAGCAGTGGGTCAATGTGAATAAAGTGGACGAGCGGTCCACAGCATATCTTGGCACTGCAGTTCTGGAGGAGTTTGTTTACTGCATTGGTGGTTATGACAGTGTGGAGTATTTCAACAACGTCAGAAAATTCAACCTCATCACACAGACTTGGCATGAGGTGGCCCCCATGTATGAGCGGAGATGCTATGTCAGTGTTGCTGTCCTGGATGGACTTATTTATGCCATCGGTGGCTTTGATGGACTTGAACGGCTGAATTCAGCTGAATGTTATAATCCAGACACCAACCAGTGGACACTCACAGCACAGATGAACGAACGCAGAAGTGACGCTAGCGCCAGCTCACTGCAGGGCAAGGTTTACATCTGTGGTGGTTTTACCGGGACAGAGTGTCTCTTCTCAGCCGAATGCTTCAACCCTCAGACAAACCAGTGGACGCTCATTGCTCCGATGAGAAGCCGCCGCAGTGGTCTTGGTGTGATCGCATATGATGGTCTGGTTTATGCTgttGGTGGTTTTGATGGTGCCAGTCGCTTGCGGACTGCAGAGGCCTACAATCCACTGACTAACATGTGGAGGGATGTTGCATCTATGCACAAAACACGCAGCAACTTTGGCATTGAGGTGGTTGATGATCAGTTGTTTGCAGTCGGAGGATTCGACGGATCGGGCACCATCTCTGATGTGGACTGTTACGATGTGGAGATGGATGAATGGTATTCGGTAAACAAGGCGTCGATCTCTCGCAGTGCTCTGAGCTGTTGTGTAGCGACAGGATTGCCGAACATCATACAATACGTGGCCCAGCGAGACGCAGTCCAGATACAAGACGAATCTGACTGTCTCAATGCATGTGGACTGGAAAACCTCAATGCACctcaataa
>TCONS_00022425
TGAGATTATTCGATCCGAGTTTTTGGTGAAAAGACTGCAAACATTTACTAAAGAGAAATATCTCAGTGATAATGGAGAACTTTAACAGTCCCACAGCTTCAAATGTGTTTGATGAAGCACGTTTACTGGGCGAACACACTGACCTGATCATCAGGGCGAATGGCACTAAATTTCAAGTGCACAAGATCATCATGTGTGCCTGCAGCCCTTATTTTAGGGTACTGTTCTCCTCCAAATGGACCAGCACAGCTGAGCATACCTACGACATCCCAGAAATGTCTCCAGACATCTTATATCTCATTATTCAGTACGCATACACAAGATCTGCGCTCATTACAGCAGAGAACGTGTTGAAGCTGTTAGTGACAGCTGATCAGCTCTTAATCTCGGGTCTCGTCGCTGCCTGCTGTCAGTTTCTGGACACACACTTAGGTCCAGAGAACTGCATTGGCATCCACATGATTACCAAGGACTTTCACTCCTGCTCAAAGCTCCACCATAAAGCGAAGCGGTTCATACTGCAGCACTTTGAGAACGTGCTGCAAGTGTCTGAGGAGTTCCTGGAGCTCCCGCTGGAGGAGCTTGAGGAGATCATTGATGATGATAAACTCAACGTCAGACATGAGGAGGTGGTTTTTGAGGCCATCCTTCACTGGATTGATCATGAACCAGAAAGCAGGAGGAAACACATTGCGACTCTTTTGCCAAAGGTTCGACTGGGACTGATGACGTTACAATACTTCATGGATAATGTAAAGCACAACCCGCTGGTGATGGAGAATGAAGCCTGCAAGCCTATAATCCTCAGCGCTATGAAGGCCTTATTCGACTTTCAGTTTGATGGACCAATAAGCTCAGAGCTCCTACATCGACTGACCCGCCCTCGTCTGCCTTCTGCAATCCTATTGGCCATCGGAGGATGGAGCAATGGGCCAACTAATGAGATTGAAGCGTTTGATATGAGGGCGGAGCAGTGGGTCAATGTGAATAAAGTGGACGAGCGGTCCACAGCATATCTTGGCACTGCAGTTCTGGAGGAGTTTGTTTACTGCATTGGTGGTTATGACAGTGTGGAGTATTTCAACAACGTCAGAAAATTCAACCTCATCACACAGACTTGGCATGAGGTGGCCCCCATGTATGAGCGGAGATGCTATGTCAGTGTTGCTGTCCTGGATGGACTTATTTATGCCATCGGTGGCTTTGATGGACTTGAACGGCTGAATTCAGCTGAATGTTATAATCCAGACACCAACCAGTGGACACTCACAGCACAGATGAACGAACGCAGAAGTGACGCTAGCGCCAGCTCACTGCAGGGCAAGGTTTACATCTGTGGTGGTTTTACCGGGACAGAGTGTCTCTTCTCAGCCGAATGCTTCAACCCTCAGACAAACCAGTGGACGCTCATTGCTCCGATGAGAAGCCGCCGCAGTGGTCTTGGTGTGATCGCATATGATGGTCTGGTTTATGCTgttGGTGGTTTTGATGGTGCCAGTCGCTTGCGGACTGCAGAGGCCTACAATCCACTGACTAACATGTGGAGGGATGTTGCATCTATGCACAAAACACGCAGCAACTTTGGCATTGAGGTGGTTGATGATCAGTTGTTTGCAGTCGGAGGATTCGACGGATCGGGCACCATCTCTGATGTGGACTGTTACGATGTGGAGATGGATGAATGGTATTCGGTAAACAAGGCGTCGATCTCTCGCAGTGCTCTGAGCTGTTGTGTAGCGACAGGATTGCCGAACATCATACAATACGTGGCCCAGCGAGACGCAGTCCAGATACAAGACGAGTCTGACAATGAATGAACTGATTCAGGCAGATCTGACTGTCTCA

Function

symbol description
klhl10b.1 Human ortholog(s) of this gene implicated in spermatogenic failure 11. Orthologous to human KLHL10 (kelch like family member 10).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131015-2 Human ortholog(s) of this gene implicated in spermatogenic failure 11. Orthologous to human KLHL10 (kelch like family member 10).

Ensembl:

ensembl_id ENSDARG00000115489

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022423 False 1809 mRNA 0.49 9 7510220 7521520
TCONS_00022424 False 1845 mRNA 0.49 10 7510998 7521586
TCONS_00022425 True 1845 mRNA 0.48 8 7513673 7521548

Neighbor

gene id symbol gene type direction distance location
XLOC_011232 NA coding upstream 63439 7446509 ~ 7446781 (+)
XLOC_011231 CABZ01057751.1 coding upstream 190055 7320042 ~ 7320165 (+)
XLOC_011230 NA coding upstream 281208 7226730 ~ 7229012 (+)
XLOC_011229 zgc:172341 coding upstream 538274 6956696 ~ 6971946 (+)
XLOC_011228 si:ch73-242m19.1 coding upstream 578159 6828550 ~ 6932061 (+)
XLOC_011234 klhl10b.2 coding downstream 1191 7522777 ~ 7531632 (+)
XLOC_011235 shprh coding downstream 12594 7534180 ~ 7589306 (+)
XLOC_011236 si:dkeyp-110a12.4 coding downstream 73770 7595356 ~ 7617558 (+)
XLOC_011237 fbxo30a coding downstream 98634 7620220 ~ 7628458 (+)
XLOC_011238 BX511121.2 coding downstream 139622 7661208 ~ 7661324 (+)
XLOC_011220 NA non-coding upstream 981677 6528023 ~ 6528543 (+)
XLOC_011217 NA non-coding upstream 1117653 6386640 ~ 6392567 (+)
XLOC_011239 BX088649.1 non-coding downstream 220030 7741616 ~ 7747160 (+)
XLOC_011242 BX927406.1 non-coding downstream 568771 8090357 ~ 8090474 (+)
XLOC_011246 NA non-coding downstream 704069 8225655 ~ 8229883 (+)
XLOC_011249 BX248131.2 non-coding downstream 778804 8300390 ~ 8300504 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017801 NA coding CM030131.1 CM030131.1 23781868 ~ 23793676 (+)