Gene
RNA
| Item | Value |
|---|---|
| gene id | G329067 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 2423842 ~ 2425198 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU374031 | True | 1247 | lncRNA | 0.34 | 2 | 2423842 | 2425198 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000112_02295987_02301298 | NA | coding | upstream | 121249 | 2295899 ~ 2302593 (+) |
| CI01000112_02275641_02277644 | NA | coding | upstream | 145231 | 2275641 ~ 2278611 (+) |
| CI01000112_02261335_02262540 | NH2L1, SNU13.S, BRAFLDRAFT_68109, SNU13.L, SNU13B, SNU13, SNU13A | coding | upstream | 161061 | 2261335 ~ 2262781 (+) |
| CI01000112_02240184_02240792 | C16ORF52 | coding | upstream | 182599 | 2237669 ~ 2241243 (+) |
| CI01000112_02207728_02210655 | NA | coding | upstream | 212885 | 2207690 ~ 2210957 (+) |
| CI01000112_02454665_02459341 | NA | coding | downstream | 29432 | 2454630 ~ 2459341 (+) |
| CI01000112_02466191_02472040 | CANT1A, CANT1 | coding | downstream | 40993 | 2466191 ~ 2472567 (+) |
| CI01000112_02483013_02484955 | LGALS3BPA | coding | downstream | 57815 | 2483013 ~ 2485133 (+) |
| CI01000112_02503439_02516455 | LGALS3BPA, LGALS3BPB | coding | downstream | 77674 | 2502872 ~ 2516636 (+) |
| CI01000112_02532994_02538052 | NA | coding | downstream | 104826 | 2530024 ~ 2538125 (+) |
| G329080 | NA | non-coding | upstream | 11129 | 2412411 ~ 2412713 (+) |
| G329079 | NA | non-coding | upstream | 13122 | 2410495 ~ 2410720 (+) |
| G329025 | NA | non-coding | upstream | 140932 | 2282689 ~ 2282910 (+) |
| G329015 | NA | non-coding | upstream | 141217 | 2250076 ~ 2282625 (+) |
| G328925 | NA | non-coding | upstream | 175434 | 2243368 ~ 2248408 (+) |
| G329098 | NA | non-coding | downstream | 116469 | 2541667 ~ 2542297 (+) |
| G329097 | NA | non-coding | downstream | 225176 | 2650374 ~ 2653361 (+) |
| G329145 | NA | non-coding | downstream | 347303 | 2772501 ~ 2772741 (+) |
| G329151 | NA | non-coding | downstream | 359842 | 2785040 ~ 2785269 (+) |
| G329153 | NA | non-coding | downstream | 363229 | 2788427 ~ 2788857 (+) |
| G328456 | NA | other | upstream | 1190724 | 1232022 ~ 1233118 (+) |
| G329125 | NA | other | downstream | 192506 | 2617704 ~ 2618151 (+) |
| G329194 | NA | other | downstream | 495056 | 2920254 ~ 2931889 (+) |
| CI01000112_05076817_05101845 | NA | other | downstream | 2659522 | 5076817 ~ 5101845 (+) |
