G329723


Basic Information

Item Value
gene id G329723
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2454543 ~ 2462342 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU374814
AATCAACTGTTTATTACGCAGCATTTCCTTACAAAAAAACAAAAAAACAAAAAAAAGAGAATGTTGCAATAACTGCTGTTGCAATATCAGTTGCCAAGTAAATCAACAGAAAGACAAAACAATTATGTGCGATAACAGAACTGTGGAAATAAAAGAAATTTCTCTACCTTAAGCAAAACACAACTATATCCAAAAAAGTTCAATTTAGTGGCCAACTTAAATTATTTGTTATTCTAGTTTTTCCTTTGTTAATTTTAGGAAAATGAAGAAAATGAAGAAAAGTGGTCTAAAACAGTCACTGAATTTCAATTCCTAGATATTATTTTCAAAATAAGGCACAATTTCAATAGAAGAGGTAGAAATCTTGCAGTGAATTTGGCCTGTCATTAAGAACACATTTTAAAGGTAAACTGCTAGAATCAACAATATTACACTTTATGATTGTTTAACACTTCAAAACTCAGGTGCTTAAAGTTTACAAAAATAAGGCTTATCCACACAAAGCCTATTGTCTGTCACAAATAAAATTAAAGCACATGTTTACAGTAGTTTCCTGCCTCACAACATCAATCTAACTATTCATCAGTTATCTATTCCAGCCTCAGTAAGACTAACAGCCTCAACATCCTCAGTTAATAAAGCCATTTGGCAGTAGATTAAGTGCATACTTTTCAACAAATGTGATATATGGCAATGCTGTGTTTTTAAGGAATTACTTCATTGTGGTAATGTATTTGGCACATAGAGTCTGTTCACTTTCTGTTGTTTAGATTTCTTCTCTAAAGATGATATGGTATGGAAACAAACCAACCTTTAAAGAAACCAATGCAATTTAGTTCTGTAGTTATGGTAAAGATTCTCTCACATTATGTGATTGTGTATTTAGGACATGGACTAGAGAAACTTCTGTTTCATCAATGTAAAAATGGCAGCTGGTGTTTGTCAGAATCGAATTTGTGGGAGAAAAACTCTAATGTTTGCACTTAGAGTTACGTTTAGTATTTGCATCCAAACAAAATAAAAAATAAATAACTTTTTCAAACATGAAAATACACACTTGCAGAAGCACACCAAGTGTCAATCCCAGGTCACAATTTAAACTCTTATGGAAAAGGAAAAATGAAGTGGAGCGTATGAATCGGTCCACACAGGTGAGCCTTTCAGACGTGTTTAAAATGCCTTCAGTACGCTGGAGGCTGATACCCGCCCTCTCCTGAAGAACTGGGGGTGAATGGGGACTGCTGGTAACCCTCTGGAGCGCCAGCATAGGCGGAGGGGTACGGGGAAGTGTGGTCGCTGACTGGATCGTTGTAGCCTAGGCCAACATCGACCATCCCTTGGCGGTATCGTCGATATGCGAACACAGTAAGCATTGCCCAGGTGGCAATGGAGAAGAATGAAAAGGCCACCACAGCTCGAGCAGCATCAGCTGGGACGGCTGTGACTGTAGATTTAGACCACTTCTGGGCTAGGAGGCAGAAACACACAAACCACAAGAACGTCCACACACCAGAGAAAACAAGATCAGCCAAGACAATGTATTTCCTCTCTTTGGCATTGCTGATCTGGTGGAAAAAGGCATCCAGCACAATAAAGACAACACAGGCCAGGAAGGCTAAAATCCCAATACCAACTCCATAGTTGCAAGCACTTTCAGTCTGATCGAACATGCATTTAGTGTCCTGCACATTCGGCTCATTGATGTAGCCTTCAGAAAGGATGGTAGCAAACACCACAATGGAGAAGAGCCAACTGAACAGCCGGACGATAGTCTGAGGTTGTTTTATAAAGCTCCCGAGATCAAAGGCTCCACCGGCCAGCGATGCACCGTAAGCACTCGACTCCATGACCGCTTTTGTGCGACTCTAGCCTGTCTTTATTGATGACAGATTCGACAAAATTGTCCAGCTTGATAATATGCTATTTACTTTCACACTTGTTTCCTGTAAGTAGTGCACCGCCCTTCAAG
>TU374813
AAATTCTGAGATTGTATTTCACTGTTTTTATTGATTATGAGGAATACTGAATGTTTTTGTGCAAGTGTAAATGCATGTTCACATTTAGAACTACAATAACTATCATGTTCACACAGCACACACATCTCTGCACTTTATTTCTCAACAATGGGACAGGAGAGCTGTCAATCAATAAATGTGAAAAAGTAACTTGCGTTACTTATTTAAGAAAAAGTAACAGATATTTTGTTGTAAACTGGAAAAGTAATGTGTTACTATACTAGTTACTTGAAAAAGTAATCTGATTACATAACTCAAGTTACTTGTAATGTGTTACCCCAAACACTGCCTATAGGCCACAATACACACACACAAAAAAATAAAAAATTTACAAACCTAAATTAGGAAATGTGGCTATAGAATGGCTAAAGAATCTAGGTTGCACACCAGGCTGTGCATTCAACATCGGTTAGACTATTCAGTGCATTGAATCTTAAACTTTGAATCGTGTTTTTGTTTGTCATTTATCAGTGCCACTGATTCATAGGAATAGTACAAAAATAAATATTTCTGTCATCACGTCTTCATGCTATTTATAACCTTTATGACTTTCTTTCTTGTACCCCACTGACTTTTATTGTAGAGACAAAAAAAAAAAAAAAAAAAAAAAACCAGAGAAATTTTTCAAAATATCTTGTTTTGGGTTTTACGGAATAAAGAAAGTCATACACAGTTTGTAATGAGGGTGAGTAAATGATTACAGAGGCCCCTAATCATTAGATTTCAAATGGGAGACAACAAATGTATGTCCCAATGCACATAGCCTACTTATGCCACACTCATTCTATTGTGATTTCACACTGAACATTCCAAACAGAAGAAAGCCCACTTTAAATACAAGGATGATGCACTTAATTAACCGAAAAAACAAAGTGTGGAATGTTGGGACACTTCATTCATGCACTCAACCGTCACAGCTTTAATTATGTAGCGGAGGGGGAGGGGCTATCAGACTCAGATGAACGACAAAACAACCTTACACAATTCATACACTACACAGTTGAGTACATAGTAGGGGTGTAACAATATATCGTGTCACAATATTAATCGCAATACAAAAATGCAACAATATCGTATTGTGCACAGTGACAATATGTGTTGTGTATAGCTCACCCAAAATGAAAAGTTTACAGAGTTATAGTGTCAGTACTACATTAAACTATTATATATAATGTTGAATATAATGTATAATAATGTAATGGGGGAATATTTGCAGGTCCTGATAATGCCAAATGTCTTATGTTACCAGTAAATGTGGCCTACATTATTTTTAATATATCCAGTCAGTGACACAGTGCAAACATATTCATCTAAAATAAATGTTTCAGCTTCAGAATCATGAATATTTTTATCCTGGGCATTGGGTTACCAGCACCAAGTCCAAGCTTATTCATTTCCACCCCCATTGTAATGCCAAATTTAGCATTTTAATCAACAGTACATTTTTTGTTATCCTTTTACCATATGTCTTGGAGTATCAATAATATCGTATTGTGAGTTCAGTATCGTGTACGTATCAAATCGTGACATGAGGGTATCGTTACACCCCTAGTACATAGTGCATAAGTACATAGTGAATAACGCATTGTGTATAAGTGCATAGTGTTTAGTGCGTCATTTGAGACACAACTCAAGTCTTTGATATTTGTTAACATGTGAAGAATCAACTGTTTATTACGCAGCATTTCCTTACAAAAAAACAAAAAAACAAAAAAAAGAGAATGTTGCAATAACTGCTGTTGCAATATCAGTTGCCAAGTAAATCAACAGAAAGACAAAACAATTATGTGCGATAACAGAACTGTGGAAATAAAAGAAATTTCTCTACCTTAAGCAAAACACAACTATATCCAAAAAAGTTCAATTTAGTGGCCAACTTAAATTATTTGTTATTCTAGTTTTTCCTTTGTTAATTTTAGGAAAATGAAGAAAATGAAGAAAAGTGGTCTAAAACAGTCACTGAATTTCAATTCCTAGATATTATTTTCAAAATAAGGCACAATTTCAATAGAAGAGGTAGAAATCTTGCAGTGAATTTGGCCTGTCATTAAGAACACATTTTAAAGGTAAACTGCTAGAATCAACAATATTACACTTTATGATTGTTTAACACTTCAAAACTCAGGTGCTTAAAGTTTACAAAAATAAGGCTTATCCACACAAAGCCTATTGTCTGTCACAAATAAAATTAAAGCACATGTTTACAGTAGTTTCCTGCCTCACAACATCAATCTAACTATTCATCAGTTATCTATTCCAGCCTCAGTAAGACTAACAGCCTCAACATCCTCAGTTAATAAAGCCATTTGGCAGTAGATTAAGTGCATACTTTTCAACAAATGTGATATATGGCAATGCTGTGTTTTTAAGGAATTACTTCATTGTGGTAATGTATTTGGCACATAGAGTCTGTTCACTTTCTGTTGTTTAGATTTCTTCTCTAAAGATGATATGGTATGGAAACAAACCAACCTTTAAAGAAACCAATGCAATTTAGTTCTGTAGTTATGGTAAAGATTCTCTCACATTATGTGATTGTGTATTTAGGACATGGACTAGAGAAACTTCTGTTTCATCAATGTAAAAATGGCAGCTGGTGTTTGTCAGAATCGAATTTGTGGGAGAAAAACTCTAATGTTTGCACTTAGAGTTACGTTTAGTATTTGCATCCAAACAAAATAAAAAATAAATAACTTTTTCAAACATGAAAATACACACTTGCAGAAGCACACCAAGTGTCAATCCCAGGTCACAATTTAAACTCTTATGGAAAAGGAAAAATGAAGTGGAGCGTATGAATCGGTCCACACAGGTGAGCCTTTCAGACGTGTTTAAAATGCCTTCAGTACGCTGGAGGCTGATACCCGCCCTCTCCTGAAGAACTGGGGGTGAATGGGGACTGCTGGTAACCCTCTGGAGCGCCAGCATAGGCGGAGGGGTACGGGGAAGTGTGGTCGCTGACTGGATCGTTGTAGCCTAGGCCAACATCGACCATCCCTTGGCGGTATCGTCGATATGCGAACACAGTAAGCATTGCCTTGAGAAAGAAGGATAAGAAGGATGAAGTTTATTAAATGTACAAGGAGGCCATCAGGCAATAAATCCCCATAAATCATAAGCAGTGTCTCAGAATAAGCCGTTTGCAGTTTCTATGCAATGTAACGTCACATTGCACAGGCTCTGCCCACGACTGCTGAGTGAGCTGTACACAGTCCGCTATGTTTATTTCCCCACCAGAGCATTTAACAGCATTTAAAGCTACTAAAGTTATTCAATCAAGAGCAGTGAGTGATTTTCTGTTTTAATGTTGTTGTTTGATTCATATTAACAGCATATATAGCAGTAGGTACAGTATATTAAGCTGCCGTCACTTTAATACACAGACCTAATATACACATGCAATTTCTTTACTTGCTGTTTACGTTCACAGACATAACCAACTGTGTTTATCTGAACTTTGTGTGTTTTTGACATAACCTTGTGTGTATTTGACAGTTTAAGCGCAATAAGACGTGAAAGAGAACTTAGTTTAATACTCACAGGATGCGCCGTCTGACAGCCAGCTTATCAAAACCATATATCAGAAGTTTAGACTGATATAGCTTTAAAACACATGCAGATAATAAACTTTCATGATGATGAAGAACTGCAGTGTCACATAGGGCTGCACGATTTATCGCAAGATAGGAAAAATAACATTGAACCTGAACGCGATTCTGATTATTGCTTAATCGTGATTCTGCGATTCTTTATGAAATCGCAAAGGCTGCGATTCTTTTTTTATGCGCAGCTTCTCAATGAAGTATGGCTCCAAAAAAAAAAATGGGCATTTGCAACATGGTATAATAAATAATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGGGACACCAGAGACTTATATTACATCTTGTACAAAGGGGCACAATAAGTGCCCTTTAATAAAGTTCTAGGCTTAATAAATGTGCTCACCCAGGTGGCAATGGAGAAGAATGAAAAGGCCACCACAGCTCGAGCAGCATCAGCTGGGACGGCTGTGACTGTAGATTTAGACCACTTCTGGGCTAGGAGGCAGAAACACACAAACCACAAGAACGTCCACACACCTGATGAGAAACCGGAGAGAGAAGCTTAAAGGGTTAGTGTACCCAAAAATTAAAATTCTGTCATTAATTACTCACCCTCATGTTGTTCCACACCCGTAAGACCTTCGTTCATCTTTGGAACACAAGTTAAGATATTTTTGATCAAATCCAATGGCTCAGTGAGGCCTCCATTGACAGCAAGATAACTAACACTTTCAGTTGCCCAGAAAGTTACTAAAGACATATTTAAAACAGTTCATGTGACTACAGTGGTTCAACCTTAATATTATAAAGCGACAAGAATACTTTTTGTGCGCCAAAAAACAAAAACAAAATAACGACTTTATTCAACAATATCTAGTGATGGGCGATTTCAAAGCACTGAGTTTATGACCTTCAAAGTTTTGATTGGTTTGGAACGACATGACACCTAACAAACAAACAAACCCCTAAAATAAACCGGTTCGTCATATAAAGTGATCATATCTCTTCACAAGACTTGGATTAAACCACTTGATTCATATGGATTAGTTTTATAACACCTTTATGATCTTTGTGGATCTTCAAAATTTTGGTTGGTTTTAGTTAGGAAACCTCTCAGGTTTCTTTAAAAAAATATCTTAACTTGTATTTAGACGACACACAAAATTCTTATGTGTTTGGTACCACAGGAGGGTAAGTAAATGATGGATGAATTTAAATTTTTGGGTAACTATCCCTTTAAGAAAAAGCGTACATGAGGAACAGAAAATATGGCCCTGTTTCAAACCATAGTGAGCATTAAGTCATCATATGTGTGCTCCAGAAATGAAGACAGCATATTCAAACCAAGTATCCAAGTATACCAAGTATTCTTCACTGAGAAGGCAGTCCCAGAATGCGCTGCGATGAGCTCAGTGAAAAAAAAAAAATCCAAGATGTCAAATTACATAATTATAAATATAGCAGTATTTCACTTAATACTGAAAACTATTGATAAAAATAAGGACACTTTTTGTCTATTTTGACTTTTTTACCCAATATTTCTGAGAGCTTTGTATTTTCACTGGAGTATCATGTTGTTAGCTTAGCAACCTGCTAACATCATAGAAACTCAATTGTGAGTCATGTATGTGTGTGCTTCTTGTTAGGCATGATTGATTTGAGTAATGAGGAGTTTGTAGAGCGTTCCAAATCAGTCAATTGAGAAGTTTGTTGACATTTGATGCTGCCTGTCACACTGCCAGCAACTTTGCCGCAGCATGTCGCCAGTTGCAGTACTGGTTAGTTGCTAGTTGGTCTTCCTAATTGTGGTTGCACTAGTACCGCTTATAAACGTCACAACTGATTTTGTTCCTCATCATTCGGTGTTGACATTAAAATAGTAATGCTGTTATTAATCTGGAGGACAAAAGTGTGCCGCTACACCATCTATCTGTACCTGACACAGGGCTATATGGGTATACATGGGATTACTTGAGCTCTGTTGTCTTCATCAAGTTGCACGCACCTGCATAAAGTTAAACCTAACACAACTTTGATGTGTAGTCCACATCTAGTTGGCAACAGTCGTGAACGCCGGCTTTTGCAATAAAAATAAATGAATTTATTGCTGCAAGTTGCTGGCAGGGTGAACTAGGCTTTCAAGCTCACTTGGTTTTAGATCGAAGCAATTATGTGGCACTTAAGACAGATCTTAAAAAAAACCTGTAATACTTCGTACCAGAGAAAACAAGATCAGCCAAGACAATGTATTTCCTCTCTTTGGCATTGCTGATCTGGTGGAAAAAGGCATCCAGCACAATAAAGACAACACAGGCCAGGAAGGCTAAAATCCCAATACCAACTCCATAGTTGCAAGCACTTTCAGTCTGATCGAACATGCATTTAGTGTCCTGCACATTCGGCTCATTGATGTAGCCTTCAGAAAGGATGGTAGCAAACACCACAATGGAGAAGAGCTGTGATGGAAAGAAAAAGAGGCAGAATTAGAGGCACTGAAAGAACCTCTTCAATAACACATCAAATCATGCACACCAGAGAAACTGATATTGAGAGCACTGCGTATATTAAAACAGAAGTTCACTGAGAACAACACTGCCATGTTGAACGGGAGGTGTGACGCTCTCACAAGATGTTTACTTTGGTTATTTAAAAAAAAAAGCAGTAACCAAACAAACAGTAAAAAACACTATGTAACCATACAGTACAAACAGAAGCAGGCCAGTAATGGCAGCATTTGGGAATCTACATCTGTGTTTTAAATCTATCTGCCTAAAGATTTAACATTAAAAAATGTAAATATTTTGCATAAAAAGTGTTCTTGTACTATCTTTCTCAAAGTTGCCATGAAACAGAAGCTGTGATAGTCTTTTCTTCCCTATTGTGACATATACGAGTGAAATGGCTTCTCGAATAAGAACAAATGTAAGGGGCTTTTGTCCATCAGGAATTGATTGGATTGTTGTGGTTTGCTATTGGTGTAATGTCATGTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU374814 False 1969 lncRNA 0.39 4 2454543 2460642
TU374813 True 6611 lncRNA 0.36 2 2455646 2462342

Neighbor

gene id symbol gene type direction distance location
CI01000112_02425312_02445848 NA coding downstream 8695 2425062 ~ 2445848 (-)
CI01000112_02412957_02416960 STRA13 coding downstream 37583 2412937 ~ 2417013 (-)
CI01000112_02324515_02338662 NOTUM1A, NOTUM coding downstream 115454 2324389 ~ 2339089 (-)
CI01000112_02317589_02318500 MYADML2 coding downstream 135658 2317504 ~ 2318885 (-)
CI01000112_02308544_02314940 PYCR2, PYCR1, PYCR1A coding downstream 139603 2308118 ~ 2314940 (-)
CI01000112_02630198_02636420 NA coding upstream 167495 2629837 ~ 2636428 (-)
CI01000112_02732722_02733132 NA coding upstream 270238 2732580 ~ 2734440 (-)
CI01000112_02830996_02831270 NA coding upstream 367502 2829844 ~ 2831270 (-)
CI01000112_02835153_02836999 NA coding upstream 372561 2834903 ~ 2838073 (-)
CI01000112_02858213_02875740 NA coding upstream 395743 2858085 ~ 2875740 (-)
G329868 NA non-coding downstream 48819 2405401 ~ 2405724 (-)
G329749 NA non-coding downstream 58035 2315826 ~ 2396508 (-)
G329839 NA non-coding downstream 76383 2369527 ~ 2378160 (-)
G329799 NA non-coding downstream 149938 2303939 ~ 2304605 (-)
G329720 NA non-coding upstream 9337 2471679 ~ 2575549 (-)
G329730 NA non-coding upstream 20062 2482404 ~ 2538479 (-)
G329762 NA non-coding upstream 150218 2612560 ~ 2612804 (-)
G329900 NA non-coding upstream 151437 2613779 ~ 2692713 (-)
G329911 NA non-coding upstream 197564 2659906 ~ 2729725 (-)
G329672 NA other downstream 435090 2016704 ~ 2019453 (-)
G329569 NA other downstream 456684 1991666 ~ 1997859 (-)
G329559 NA other downstream 644804 1791084 ~ 1809739 (-)
G329587 NA other downstream 821221 1629776 ~ 1633322 (-)
G328642 NA other downstream 1167585 1286655 ~ 1286958 (-)
CI01000112_03068505_03072256 NA other upstream 604978 3067320 ~ 3072879 (-)
CI01000112_03506254_03517454 NA other upstream 1042113 3504455 ~ 3518742 (-)
G330301 NA other upstream 1297457 3758244 ~ 3773774 (-)

Expression


Co-expression Network