G329097


Basic Information

Item Value
gene id G329097
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2650374 ~ 2653361 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU374064
AACCGAAAGCAGAGCAGTAGAAACTGTGGACGCCTTTTCAGAAGATTCAGGAACAGAAATGTCTTCATATGTTATGGTCTGAAATCAAGGAGGAAGAGAAGGAGCAATTTGTATGCGAAATGAGTGTGTCTGAGGAGAGAGAGGAGGAGGCGTCTGTTCACACTCAGAGTAACAGATCCATGCATGATCCTCCTGTGTTCAGTGATGGACCATCTTCAGGATCCAGCTGTGTGTCCATGAAGAGTAACAGATCCATGCATGATCCTCCTGTGTTCAGTGATGGACCATCTTCAGGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU374064 True 297 lncRNA 0.46 2 2650374 2653361

Neighbor

gene id symbol gene type direction distance location
CI01000112_02585528_02607525 USP36 coding upstream 42706 2584929 ~ 2607668 (+)
CI01000112_02565726_02573879 TIMP2B coding upstream 76268 2565508 ~ 2574106 (+)
CI01000112_02541564_02549213 NA coding upstream 100930 2540950 ~ 2549444 (+)
CI01000112_02532994_02538052 NA coding upstream 112249 2530024 ~ 2538125 (+)
CI01000112_02503439_02516455 LGALS3BPA, LGALS3BPB coding upstream 133738 2502872 ~ 2516636 (+)
CI01000112_02659891_02661832 NA coding downstream 6530 2659891 ~ 2662015 (+)
CI01000112_02740099_02758394 CYTH1, CYTH1A, CYH1 coding downstream 86738 2740099 ~ 2758394 (+)
CI01000112_02774549_02777028 SOCS3, SOCS3A coding downstream 120095 2773456 ~ 2778631 (+)
CI01000112_02992698_02995752 NA coding downstream 336460 2989821 ~ 2996663 (+)
CI01000112_03085161_03094204 HID1 coding downstream 431800 3085161 ~ 3094406 (+)
G329098 NA non-coding upstream 108077 2541667 ~ 2542297 (+)
G329067 NA non-coding upstream 225176 2423842 ~ 2425198 (+)
G329080 NA non-coding upstream 237661 2412411 ~ 2412713 (+)
G329079 NA non-coding upstream 239654 2410495 ~ 2410720 (+)
G329025 NA non-coding upstream 367464 2282689 ~ 2282910 (+)
G329145 NA non-coding downstream 119140 2772501 ~ 2772741 (+)
G329151 NA non-coding downstream 131679 2785040 ~ 2785269 (+)
G329153 NA non-coding downstream 135066 2788427 ~ 2788857 (+)
G329101 NA non-coding downstream 209724 2863085 ~ 2868729 (+)
G329184 NA non-coding downstream 247825 2901186 ~ 2901402 (+)
G329125 NA other upstream 32223 2617704 ~ 2618151 (+)
G328456 NA other upstream 1417256 1232022 ~ 1233118 (+)
G329194 NA other downstream 266893 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 2431359 5076817 ~ 5101845 (+)

Expression


Co-expression Network