G330013


Basic Information

Item Value
gene id G330013
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2845705 ~ 2852394 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU375123
TCCTCCTCTTTGGACAACAAGACATAGTAAACAGTTGCAAAATCGCTAAAGATGCAACTGGAAACATTGGAAATAATGAAAGCAGAAATCAAAATGTAACAGTGAAGAAACTGATCCACACTAGGGGTGCAATGGTTCTCGGTAAAAAATCGAACCGTACCGTTCTCCACTTACGGTTCGGCACGCACTTGCACCGCGATTCATTTCGAATGACGACACATCAAGGTTCGTTGACAATAGAAATGTGTAAAACAGACAGAGTTCGGATAATGTATGTTTCAGTCGATGAATACGCATTCTGGCTTCCCAAAAATGTTACAAATGCGATGATGAAAGCGTGGACAAAACTGTCACGCTCTGTAAACTTGGTTCACTGCGAGTGCCATACGCTCGAATATGAGCAGTCATTTACGGCGTCATTTTGATGGTGCACAAGCGCAGGTGAGACCTGAACAGCGCACGTTGCTATCTGTGTTTAAACTAAACTCATTTAAGCTTTGCTAATTTAAACATTAAAGAGCAAGACGCTAAAGAGAACTCACACGCTGTGAGAAGATTTGTGTGTGCGCTTATCCGAAGCATGCACGCCCTTTATCTCAGACAAATATGGAGTTCTCTTTCAAGTCATGCGTTTGAACGGACAAATTCACACAAAAATTATGTCAACATGGCCGTCTTGGCAAGTATCCTAACAAACATAGTCGGTTATGTCTTGAGTGAACGTATAACAGTCGAAAAAATTGTGCGTTATATCTTAAAGGGAAAGAAGCCTATTACTGCTGCCTTGTGTTTTTAATGTTAATTAAACAACAAATGACAAAGAAATCACTCACTGCTCTTGACTGAATAGCTTTTGTGACTAAATAATGATTTTTTATTTGATTATTTTATTTATTTTCTGTACCTGAAAACTACTGTTAGATACCTGAAAAGCACTGTTTATTTTATTTGAATCTTTGCTCTATTGTGTTGATTTGTGCTGTTGCTTGTAGTTTGATTATTTGTTCATATTTTCTTTATTTTAATTTTACAGTAGCCCTTTTTTCCCTGAACATAGCACATACCAAACCGTACCGAAACCGTGAGCCTAAAACCGTGATACAAACCGAACCGTGAGCAATCTGAACCGTTGCACCCCTAATCCACACAGTAGGGGGAGCTGTGATGCAAGTGGCTGCCATGTCCGTGTTGTATTACAGCTGTTCTTTAATGTAAGTTATGTCCGTTTCTGTCAGTTAGAACAGCACACAAAACATTGTTGTGTTTACATGCTACTCGCAAAATCCTGTCATTGCCACTGTAACAATTTTCTTTACACGCATACCATCATTCATCATTGAAATCATATAATTCGATTTGTGTCTTCTGATTGGTTTCTGTGGACTAGGGTCTTTTGCTGACAAAGGGAAATGCATTTATCGGTTTCTGCCAACGAACCGGTATTTCTGAATGGGCTGAGACTGGGATTCAACGGATCTGGGGCCAGATTTACTGATAGCTTGTGCCAGTGCAAACCCTCTTTTGGTGTTAAAAAACTACTGTAGGGATTTACTAAATACACGCAGTGCAGAATTAGCACTGAAAAGGCATGGACTGAGTTGTTTTTGTGACTGACCTAATTGCATAATTGCATATACATTTGTAGGAGTTTACATTTAACATGTTGTTTAACAATTGTAGCAAAATGATCATTTAAATGTTATTTTTCTTAATTGCATTTACACTCACAGTTAAGACACTTGTGATTGCATTTTCATTAAATGTCCCACAATGAATGTAGCAAAATTCAATGTGGATTTGAAACATGGCGACAACAGAGCTATAAAGATTCACAAGAACAGAGAAATGTCAGTGTTTCTGCAGATTATGCGCGTCCGTCAGTGATAGAACCAGTATGTTACGTTTTTTTTTTTTTTTTTTATTGCTTTGGTGCAATTTTCACAAGGAATAGGTACATTTTCAAAACTCTTAGTACTAATATCACAACAGATCATCAAAATTGCAGTTTTTTAAAACATTTCAGTATATTTTCATTTGTGTTATTACAATACACAAAATCACTAACACAAAATAAGTATTTCATCTATATAAATGTTTCATTCATAGTAACTGCCTTTCATAATGTTGTTATTGTCAAACTTTTGATTTGCATCTCTTTTCATTCAGTTTAATACATTTATCTATTATTTAATCCAACTGAACTTAAAAGTGCCCTAGAATTGAAAATTGAATTTACCTCAGCATAGGTAAATAATTAGAGTTCTGTACATGGAAATGACATACAGTGAGTCTCAAACTCCATTGTTTCCTCCTTCTTATGTAAATTTGATTTTTGCAAAAGACCACTGAAAAACAGGTGAATCTTATGGAAGTAAATTAATGCCAAATGTTTTTGAAATAAAAAGCTTGTTGAATTGCACTAATTGAAAAAAAATATGCATTGCATTAACTGTGCTTTCATTGTGATGCATTGTATTTTTAAGGCTTGCATTTTTTGGGCTGAAATTCATCATGGTTGTATATTTAAGCTGTGAATATTTCAATTTAAAACATTTCACACACATTTTCATTATTAAAAATTCAATCATTTATATTATATTCAATCATATAAAATTCGACTGGCAATTTTCGGTCCATTTTATTTCACTTTACAAATTCGCTTCCACAAATTCAGTGGTTCAAATTCGGCAGAAAATTCAACATTTCACATCCGGGAACTGCAGGAAAAGCAGTAGAGTGCCGATGCATGATCTCCATCTGCTGTTAGTCGACTTCACCAGCAGGTGCCGCTAGTGGCTTTTTACGAAGAACAGAGCAAGGCTAGTAAGTCATCATTCATTCATAAAAACGGATTTACAGAACTGGAGCAAGCAGTAAGTGAATGTTTGATGATTATCAGGGCCAGTATAAATGCAGAAAAGCTGATAAAGACAGAAAAGCTGCATTTATGTTTAATTCAGTGTCTTCACTGTTTCTCTGTGTAGGGTACAGCTTTCTCTCAGTGAACGAGATTATAATGTTATTGCCCGAAGCTGATGTACATATCAAAGTTAAATCTGAGGTAGACATATATTTCTCTCTGTTGTTTAGTTTCCCTACCTTTATATCACAGCGCTGTGTTATAATACTAGGGCTTCCCTCATACTTCATAGGATTCCCCTGCCATCAGGACATATAAAACACTTAACACAGCTTAATGGACTAGTACAGTGATAAAAACACCTCATTTGATTTGTAAGTTATACTATATAGGCTCCAATAAAGCAGATATTGGCATAAAGTTGGTTTGACGTTGAACTTTTAATATTCGCAAATTTAGGGACCGTCTCTAAAGCTACAACATTGGTAATCACGTTTCTACCTTCAATAGCGTTTAAAGAGAATGACTTACAGTCACAAAACCAACTCTAAAGTGTTCATCTAGGTGTCAGGTGTCAACATAGCTTAATGGACTAGTACAGTGATATAAAAGACCAAACTCGCACCTCATTTGTGATGTAGGTTATACGTTGAACGTTTGATATTCGCAAATTTAGGGACCGTCTCTAAAGTTACCACAGGTGAAAAAATACTATAGTAATTTATAGTAAATACTATAGTGTTTTTGAACCATATTATAGTAAAGTACTTGAATTAATTTGTTGTGGTAATTCTATAGTTGCTGTGGTAATATAACAACTATAGTCAGGGGTGGGCAAAAATACATCAAAATGTATTTTAAAATAAAATAATTTTAAGTGTATCAAAATAAACTACAAAATACAGCAGCCACAAAATGTATCAAAATAAACTACTGTATTTTTGTATTTTAAAAATACTACAAAATACTTTTACAAGGGAGCATGAAATTTCTTCGCTAACCATCCATCAATTGGCCTATTTGATCTATCCCTTCACCATTACACTGACTCAGCTGATTAAGTAAACAATGTTTGATAGCAACAACTTTTCTCTGGCCGAGTCATGCAATAAATCTGACATATGCAACCAGTTAAAAGCACAATATGTAGGATTTTTTTATTTAAATGTCCAAAAACCGCTAGGACAATTTTATATATTTTGTTGACTTGTGTACTTACATTAAAAATTTTCCAAAATTGTTTAAATTCAGAGAAATAAGCCATTTTAATCAGGACACAGACCGTGTCCGTGCGTCGCCTATCAATGTCATCATTACCCTCGATTTCCGGTTTTATTTTATAGAAACCATGGGAACATCAAAAACACTTTAGTATATTATGTGTTTTATTAGACAGATGGGCAACTGTTTGAATACATTCATTAACAGAAAACTACTCATGTTATAAAGCTCAACACATTAAGTCTTTTTGTTTGAATCTTGTTTTCTTGATTTACTGTGAGTACCATGTTTTACCATGACTAATATCAATCTAACTTACTGCAGTGTGCAACGAGTGTCTCATAGCAGCTGCCGAGCGAACACACAGAGTAGCAGTATAACAACTTTCAACACACAAATGTGTCTAATATGATAAATCAGCGCTGCGTTACCCCACATGCACATGACCGGAAGAAGCGGAAGCAGCAGCTGTGGCATAATAAATGTCCCGCTGCTCTCGAGGTGTGTGTCGCACTCGTCTCTCATTATCTCTCACAGCACTCGGCCATGCTCTGCTTCATACTACAGTAACGTTAATAATCTCATCCATGAACATGATTTCTGCCTGAGTCTCTCATCCATCCATCCATCCAATTTTTTCCTGAGTGGATTCTTTTCCACCGGCTGTAGACGTGAAGACAACACATCCCATGATTCCGTGAAATCAAGGTGTCATCGAGCTACGCCTTTGTTTTGAATAAGCGACCTCTAGTGGCGAAAAATTACATATTGTTGCTTTAACAGATCCAGTATTAACATATCACTGTGATCTCCCAGATGAAGGTTAGTTTTAAAGTAACCAACAGTTTCCTAATTTAGTTACTTGGTGTTTGGTAACGAAGGGCCTACTTTGTATCAGCAACACTGACTCAATGACAAACAAGTCATTCATAAGAAGACAACTGATGGCACCTGTATTCATAGCAACTAGTTTCTAACTAATTAATCATTTGATTGTTAATCATAAATATAGGGGGCTGCTGCTCGGTATAACTGTTTTCAAGAACATTATGTAAATTGGTAAACTATTTAGCCTAGGCTACCAAAACTTAATACGAACTCTTAAAAATTATAGCAATTTACGCAAAAAAAACTTGATGGAAAGCTGGCAGCCTGCACGTTTCTTACCTTGACCACCTTTTTTCCATATGGATCAATTTTCTGTTCTGATAGCAACAAGTCTCTGCAAACTACTGAGTAAGCACCAATCAGAGGCCGCATTTTTATGATGTCATCATGTAGACTTCTTACAAAGTTTTTTAAAAATACAAAACACTAAAGTATTTTGATACAAAATACAAAGCCATTTTCATCAACCCTATCAAATACAAATTACAAAATACTATTTTGTATTTCAAATACATATTTGAAATACATGTATCATAAATACTGCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375123 True 5516 lncRNA 0.35 2 2845705 2852394

Neighbor

gene id symbol gene type direction distance location
CI01000112_02835153_02836999 NA coding downstream 7632 2834903 ~ 2838073 (-)
CI01000112_02830996_02831270 NA coding downstream 14435 2829844 ~ 2831270 (-)
CI01000112_02732722_02733132 NA coding downstream 111265 2732580 ~ 2734440 (-)
CI01000112_02630198_02636420 NA coding downstream 209277 2629837 ~ 2636428 (-)
CI01000112_02425312_02445848 NA coding downstream 399857 2425062 ~ 2445848 (-)
CI01000112_02858213_02875740 NA coding upstream 5691 2858085 ~ 2875740 (-)
CI01000112_02887084_02894055 FSCN2B, FSCN2, FSCN2A coding upstream 34280 2886674 ~ 2894589 (-)
CI01000112_02930571_02969824 BAHCC1 coding upstream 78055 2930449 ~ 2969824 (-)
CI01000112_03068505_03072256 NA coding upstream 215851 3067320 ~ 3072879 (-)
CI01000112_03095649_03099316 OTOP2 coding upstream 242728 3095122 ~ 3099316 (-)
G330050 NA non-coding downstream 25574 2819912 ~ 2820131 (-)
G330029 NA non-coding downstream 64568 2780912 ~ 2781137 (-)
G329956 NA non-coding downstream 81024 2764407 ~ 2764681 (-)
G329928 NA non-coding downstream 90599 2748214 ~ 2755106 (-)
G329911 NA non-coding downstream 115980 2659906 ~ 2729725 (-)
G330063 NA non-coding upstream 42663 2895057 ~ 2895482 (-)
G330000 NA non-coding upstream 151394 3003788 ~ 3005219 (-)
G330082 NA non-coding upstream 225992 3078386 ~ 3082355 (-)
G330081 NA non-coding upstream 232799 3085193 ~ 3087086 (-)
G329964 NA non-coding upstream 340917 3193311 ~ 3263885 (-)
G329672 NA other downstream 826252 2016704 ~ 2019453 (-)
G329569 NA other downstream 847846 1991666 ~ 1997859 (-)
G329559 NA other downstream 1035966 1791084 ~ 1809739 (-)
G329587 NA other downstream 1212383 1629776 ~ 1633322 (-)
G328642 NA other downstream 1558747 1286655 ~ 1286958 (-)
CI01000112_03506254_03517454 NA other upstream 652061 3504455 ~ 3518742 (-)
G330301 NA other upstream 907405 3758244 ~ 3773774 (-)

Expression


Co-expression Network