G329197


Basic Information

Item Value
gene id G329197
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2946342 ~ 2949164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU374200
TCGATTCATAAAATTGAGGTTAAACCCTGAAGTCACTTGGATTACTTTAACGATGTCTTTACTACCTTTCTAGGGCTTGAAAGCGGAAGTTGTGCAAGCTGTCAATGGAGGGACAGAAATCTCTCAGATTTCATTAAAAAGATCTTCATTTGTGTTCCAAAGATGAACGAAAGTCTTACGGGTTTGGAATGACATGAGGGCGAGTAATTAATGACAGATTTTTCATTTTTGGTGAACTAACCCTTTAACTATTTCATATAAACACAACCCAAAATGACATATTAAGATTTGTTTGGTTGCTTTACATGTTGGTCAGGTGATCTCTTCCTGTCTAAGCGGACCAAACAAAGTAGAACAGACCAAGAGTACAAGACTAACACATGTGAACGTTTCCCAATGTACACACACACACTATCTCAGTTTTCTCACTGCCGCTGGGGGCACATGCACTCAATTAAGAAATATCCAAGACATCAACTGCATTTGTGTGAGAGAGGAAGAGAGTGTTGAATAATTGCGAAACATTTGAAAGCTTTTCTTACTTTTCCAAGATAAGACAAACTGGCTGACACTCACCTTGCTCAGAGGACTCGCTCTCTAGGGGGGATGTCTCCCCGTCCTCATCCACTTCCTGTCCCCTGCCCTGCGGGATCCTGGCCCCTGACTGCTGCAAACAAACTGCTGATCCAGGACTTTTCTTCCTTTCCCTTTTAACTGCCACTGGCTCGTGCCTCTTCCAGCACTCTTGTGTCCCGCTGTCCCCACTCGTGGCTGGAAAAGAGAGCAAAACACAATCATTTCCATGCATACACGACTTTATACTATATCTGAAAACACGGCATGTCCTTTGATTGCATTGAAAGGACATAATGGACTTTGCAAAAGTCCATAATTTAGTCAGAAAGTTTAGAATTTCAATACTAAGAGTGTGCATTGTGGTTATTCTGACTACTTGAGTACCTGACAGATAAACTACATCTCTTTTGGCATCTCTTATGATTTCAAGTTAAGAATTGCTTCAACTTTTGATAAACATTGATCAGCGAACATAAACAGAAGCTCAACCACACAAGGACAAACCTTATTGGTTCTCGCATGTCAAGTGAACATGCTTGAGCTTCCGTTTCCATAACTGATGTGTGCGCTGATGAATGTTTATATGTGAATAAAAGCCTAAATTAAATCTTTTCATCATATGAAGCGATCGAGTCTCTTCAGAAAATTTTGACTAAACCACTCAATTCATATGAATTTGTTTTACAATCTCTTTATGAACTTTTTGAAGCGTCAAAGTGGTAGTCGCATAGCTGTCTATGGAGGGACAGAAAGCTCTCAGATTTCATCAAAAAGATCTTCATTTGTGTTCCAAAGATGAACGAAAGTCTTACGGGTTTGGAACGACATGAGGGTGAGTAAATGATGACAATTTTCTTTTTTTTTTTTTCTTTTTTTTTTCTTTTTTAAGTCTAAGCAGTAAATCATAAATCAATAAAAAAAATGGAGCATTATTTTAACAAATGTAGATTGTACTGACTTCTATTTTTCAAATGTTATCTTAATATCCTGAGATGGTGATATTTTGTTCTTTACTGTTACATAACCTTAGCTTTGTCTTGTTAAAACCAAGTGACACATATGATGATGGTGACACAATGCCATCATGGAAGATGGGTTTTACCTGTATCGCTCAGGCTCTCAGACTCATTGGCTGCGCTGAGCTGTGTGGAATCTCTTTTGGAGTTACTGTGGCCAGAGTACAGGTTCTTAGATGTTGAGGAAAACTCTCGGTCTCTTGACGCAGCTCCAGATGTATGTCGTCCACCTGAGACCTTCTGCTTGAGATGACTTATTTGTTGATCAAGGGTGCTATTCTTCCTGTAACACTGTGACTTCATCTAAGAGAGAGCAACAGGAGGAGTAGACATATTAATGTAATATGACCAACATCAAGACTTTTTCTGGGCTACTTTTTGATCCTTTGCCAAGCCCCTAAAATCACGCTGTTCGCATCTCCAAATCAGCTCAGCAAAGGGTCATTAAAAAAAGCATGAGCATCAATTGCCGATAATTGGCTTAAGGGAGCGAGTGAAGAAAGGACAAAGACTCATGTTTAGAGGACTAACCTGTGTAGAGCTGAGACGGCTAAACCCTCGATTGGACAATTTTTTCTTCTTCTTCTGAGAGTCTCCACCTCCCCGGTGCTCCTCTGCTAGTGGACTTAGGCCCGCCCCCACCAATCTGTCAATCAAACAACAGCAGAGCCTGTTACAGACAGTGTCGCTCAGTAGTGGTGGATATTTTGATTCATCCCATAATCCATTTATTTATATTTGTTACGTCATTACCGCGGTGTCTTTTTAAGTCATTGAATCATTTACTCAGCAGATTTGTTCAAAAGTGTTATGTGACAAAATCAAGTCTTATTATCCTTTAGTAAAACTGATAACTGATTTCTCCACAAATAACCATTTTTATTTTTTATTTTGACAACTTTTGAGCTTGAATTTTATCAAACTATAGAAAGAACAACAACAATAGCATACATAAATTAGGTTAATTCTTCGGCCATTTTCTTTCTGTGTTGAATGACTCATGCCCCCTATCGTTCAGTCAAAACATTCTCGGCCACAAAAATGTCCCAGTTCGTTCAGCGTTGCTCCATCTTTCAGATTTAAAACACGGTCTCATTTAGTGATGGGTGTATTTGTTCAGCAGGTCCAATAAATGAAATTCTTCTTCAGAAAACACACTATAATGCTGTTTGCATGTGCTATAATCAGCCTTGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU374200 True 2788 lncRNA 0.39 2 2946342 2949164

Neighbor

gene id symbol gene type direction distance location
CI01000112_02774549_02777028 SOCS3, SOCS3A coding upstream 167711 2773456 ~ 2778631 (+)
CI01000112_02740099_02758394 CYTH1, CYTH1A, CYH1 coding upstream 187948 2740099 ~ 2758394 (+)
CI01000112_02659891_02661832 NA coding upstream 284327 2659891 ~ 2662015 (+)
CI01000112_02585528_02607525 USP36 coding upstream 338674 2584929 ~ 2607668 (+)
CI01000112_02565726_02573879 TIMP2B coding upstream 372236 2565508 ~ 2574106 (+)
CI01000112_02992698_02995752 NA coding downstream 40657 2989821 ~ 2996663 (+)
CI01000112_03085161_03094204 HID1 coding downstream 135997 3085161 ~ 3094406 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding downstream 150284 3099448 ~ 3106273 (+)
CI01000112_03112349_03117520 NA coding downstream 163185 3112349 ~ 3117587 (+)
CI01000112_03192658_03204707 MHC1ZBA coding downstream 242497 3191661 ~ 3205032 (+)
G329192 NA non-coding upstream 15456 2927424 ~ 2930886 (+)
G329190 NA non-coding upstream 28174 2917949 ~ 2918168 (+)
G329184 NA non-coding upstream 44940 2901186 ~ 2901402 (+)
G329101 NA non-coding upstream 77613 2863085 ~ 2868729 (+)
G329153 NA non-coding upstream 157485 2788427 ~ 2788857 (+)
G329195 NA non-coding downstream 77853 3027017 ~ 3048993 (+)
G329276 NA non-coding downstream 118667 3067831 ~ 3072729 (+)
G329277 NA non-coding downstream 148756 3097920 ~ 3098296 (+)
G329307 NA non-coding downstream 260977 3210141 ~ 3211831 (+)
G329354 NA non-coding downstream 269250 3218414 ~ 3218673 (+)
G329194 NA other upstream 14453 2920254 ~ 2931889 (+)
G329125 NA other upstream 328191 2617704 ~ 2618151 (+)
G328456 NA other upstream 1713224 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 2135556 5076817 ~ 5101845 (+)

Expression


Co-expression Network