G330014


Basic Information

Item Value
gene id G330014
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3195863 ~ 3245286 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU375124
TAACCTTTGCCAATACTAATCTTATATACAGGCATTTGACTAAAAATACATTAGTTGCTCCCAAAATGAATTCAACGAGTCATCTTGTTAATGTTATAAATGAATTATGTCTCCGTTTGTCATTACCGATTAAAGGGTATCTGGCGCCACCGCACGGTTAAAATAAACACATTTACAGAGTACGTTGGTATTAAAAACAGCTTTTGAAAACTGTTCATGATTCAGTTTTGGGGACCGTGACAGAAGTTTGATGCGGTCGTGGAACAAGCAACAGTCGGCATTTTTCCTCTTCCCGACTCGAGTGCCTCATCTTCTTAATCTCCTCACATAAATGATTACATTTCGATGACTTGCGTTTCTTCCCCACCACAGAAACCACCACAGGATCATCAATGCCATAAAAATTATTCATTTTTCTGTTTTTGTTGATCACAAAGTACAAAGAAGATAAGGAAAACTAGGATGCCGGGTGTATTCAGAGCGCCGCCATTACTGTTTACAGTGCGTGGAATGGTGTGCTGTGATTGGTTGAGCAGATATATCGCATTCTGCAGAGAAAGGAGACTGGCGTTTGTCGCGTTTTGGAAAGAAAGGGAGAAAACATGACAGAATAACACGACGGATATCGCATTTTGCGCAAAATTAATAAATGACTTTTCAATACCGACCAGATACAATACTGATTTTGGCGGAAACTCAATTTTTTTTTTAAAATGGTGTTTATCGCGTTTTAGAACCAAACTCTTCATATATTCCTACAGTCTATGTACATCTACTGACAAACAGATATTTATTTAGCTACTAAGATGAGTTACAGAAAACAATGCTAACATTTTTATTTTATACTAAGATAAATCTGGGGTGGAAATGCTTTTTCTTAGGGTGTCAGTCCGGTAGATCCGCCCCTGTTAACTGATTATGTTCTTCATCTGTGTTTTGTTGCTCTGGTATATATTGCCCTGTATTTCTGTCTTGACTTGACAGCTGATTAGCATTAATAATGACAGTAGGTAAATTTGGATGCTGTCCCTTTAAGACTGACTGCACCGATCCATTAACTTGAGCCTTGTCTTTCTCAACTGTACCTTCACTTAAGACCTAAATGGCTTTTGTTTACTTAAAAATACATGGTCACTTTGACACATAGGTATGTGTATTTATCCGTTCAAGCCCAACTAGGCAGCAAGAAACACTCAGTTTCGCCCTCGTGCGTTCTATGAGCAGCGTCATGTCAGAGAGCGCGCGCATATGCTGAAATAAGTTGTCTTTTGCTGCCAATTGCGCTTCAACAATTTAAAACTACTTGTTTTTAAACCGCAATGCTTAAAAATGGATGCAAACATTAAGGTTTCATTACTGCGCAGCACAGCAACGTCACGTGAGTGTATCCGTGATAAAGACGATTGTCCAACATCTACCGGTTGACAAATCGGTTAATCATGTCTACCGGTATATCGCCCACTCCTACGAGGTACTAGAGCACATTTGCACATAAACTGTTCAAAAGCGGCACTTTCGTTCTCTTGATAAACTAAAAGACATTGAATGAAATTTGTATATATACATGGAATGAAAGACTGATTGTCCTGCATCTTGGCTTGCTTATTTTGCACAAGAGCATGATCTATTTAAGTCCACATGTCATACTAAAAAGAATCTATGCTTCTACCACGGTTTGAGAGCTGTAGTTCCAACCACACAACTTTGCGATGCTGTTTGCGAATGTTCGTTGGAACTATGGTTTTGGGAAACACCAAATCTCTGCATTATGTTATCTTGCAACCATAATTGGCCAACAATGCTTTTGGGAACCGCACCCCAGAATGTTAATCATTAGTAGCAGAAAACATTCCCTGTCAAAACATAACCACTATGTATTTTAAGCAGCAATCTATCCCATTTGTGCCCATCAAAAACATTAGAGAATCCAGCAGTAGGACCATCCACTACAGGACCTCTAGTGATAAAACTGTTGTACTGTATATGTGAACACCCCATAATACTTATCTAAAGGGAAATATAGATTCACTCCAATTGAGTCCTATCTGAAGCAGCTTACCTGGGAGAAGGGTTTTGTCTGTTTCATTAATATGTTTAGGTACTCCATTTGTATTGCTCCGATTTAGGAAAACTAGAGAGGATTACAAATAAAGATGAAAAATACAGTTACAATCTACATAAATTGCTGTCAGAAGTAAAGAAGTGAAGTCCGGACCGCATAATTAAAAGGTATAGTTTTTAAAAGAAGGTTCATTGTTTGCAGCTTAACCACATTAATATAAAATTTCAATGGACAATTTCAAGATTTTGGACATACTGCTCACCCCAAAGTGAAACAATAGTTTTTTTTCTCTCTCTCTCACTTTCTCTGAAGCAGTTCTGTCAATGTTGACAGTTGAAGCAACTTTATTTAAGAATTAAAAAGATTGTGCCCAGAATCTGTATTTGTGTCGTAATACTCACCCATTTTTTTAGTCTTATAAAGGTAAACGCAGACCCCAAGAACAACAGCTGCTACAGCTACAGCTCCAATCACAATTCCAATAACCATAAAAGAGCCTTCATTACAGTCTTTGCATTTTCCATCTGGAAAAAAAATAAATAAATAACACATTGGACAATGGCATGTAAAATATAAATATCTACTATATTTAGAAAACTGAAATTCAATTCTATTGATAAGCCTTTAACAATGTCATTTTAAAGTCATTTTAAGGGGTCATAAAACACTAAACTACATTTTCTGAGATTTTAACAAGCGTGTTATATCCATTAATTTTAATTGCCAGAGAAAACGGTTTAATTTTTAGCTGTTTGGCACTTAGGGTTTAAAATCTTCATAGTGTCCAGTGTTCATCAATTCATCAATCTGGTGCACTTTGAAAGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCTTCGTGTCCTTCCACACCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375124 True 2949 lncRNA 0.37 2 3195863 3245286

Neighbor

gene id symbol gene type direction distance location
CI01000112_03167204_03177153 NA coding downstream 18710 3167026 ~ 3177153 (-)
CI01000112_03153190_03161585 NA coding downstream 33654 3152711 ~ 3162209 (-)
CI01000112_03109001_03110428 AMN coding downstream 85435 3108877 ~ 3110428 (-)
CI01000112_03095649_03099316 OTOP2 coding downstream 96547 3095122 ~ 3099316 (-)
CI01000112_03068505_03072256 NA coding downstream 122984 3067320 ~ 3072879 (-)
CI01000112_03291919_03299963 RAC3B, RAC3, RAC3A, RAC1, RAC1A, RAC1B, RAC3.S, RAC1.L coding upstream 45955 3291241 ~ 3299963 (-)
CI01000112_03367247_03384263 CACNG5B, CACNG5, CACNG5A coding upstream 121587 3366873 ~ 3385884 (-)
CI01000112_03393172_03448154 PRKCA coding upstream 146566 3391852 ~ 3448154 (-)
CI01000112_03506254_03517454 NA coding upstream 260386 3504455 ~ 3518742 (-)
CI01000112_03569282_03569449 NA coding upstream 323831 3569117 ~ 3569783 (-)
G330081 NA non-coding downstream 108777 3085193 ~ 3087086 (-)
G330082 NA non-coding downstream 113508 3078386 ~ 3082355 (-)
G330000 NA non-coding downstream 190644 3003788 ~ 3005219 (-)
G330063 NA non-coding downstream 300381 2895057 ~ 2895482 (-)
G330013 NA non-coding downstream 343469 2845705 ~ 2852394 (-)
G329975 NA non-coding upstream 27254 3272540 ~ 3275001 (-)
G330170 NA non-coding upstream 119099 3364385 ~ 3364668 (-)
G330012 NA non-coding upstream 224639 3469925 ~ 3485776 (-)
G330020 NA non-coding upstream 242021 3487307 ~ 3503308 (-)
G330002 NA non-coding upstream 296996 3542282 ~ 3556118 (-)
G329672 NA other downstream 1176410 2016704 ~ 2019453 (-)
G329569 NA other downstream 1198004 1991666 ~ 1997859 (-)
G329559 NA other downstream 1386124 1791084 ~ 1809739 (-)
G329587 NA other downstream 1562541 1629776 ~ 1633322 (-)
G330301 NA other upstream 514513 3758244 ~ 3773774 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G200779 NA non-coding NC_047606.1 CM018552.1 22114406 ~ 22114822 (+)