G329970


Basic Information

Item Value
gene id G329970
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 4035606 ~ 4038297 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU375080
CTTTTTCACTGTAATCGAGTTGGGACCATTGCATCTGTTTCTTTTCATATACATAAGGGTTTCCATAGATCTCAAAAAACTGTCGGAGTTGACTAAAGAAGTTCCTGAGGTTAATTTTGCTCCAGCTTGTCAGGAGGTCAAAGATACTTTCCAGCATGAATGTACCAGCGATTTTTCTTCCCTGGAGTACACTTTTCTTTTGATCAGGCCAAACAGCTTTTTTGAACCATTCAAACATATTATTAGATGGTTCTGCACAGATGATATCATCATACTGATGCCATTCCCCTGCTTCATCATTTAGGAGATGTGATTTGACAAACAGACATCTGTTGGTGGTTTCATTCGAATCCAGTTTGTAGATGTATTCATAATGTAACTCAAACTTCTGCTTTTTTTTTGCTTTATATACAACATACTTGTAGGGGATGGACACAGATTCAGCATCAGTTTTTTTGCAAACAAACTTCCCTTCAACAAGAAATCCATGCTCTCCGAGATTCCTGAAATCAAATTATTCTTAAAAAAAATGGAAATAGTAATGAATAATCAAAAGCTGGCCCTGAAAATTTTTACTAACCGTGACACAGACAGTTCGACAAGATCTTTTTCCCAGTTACCAATGTGACTACCAGCCCTTACAAAAATATAATCCTCGTCTGGGTTAAACTTGAAGTCTTTCGACAGGACTGCATGAAAGTAAATGGTGAGTTTGTCTCTGGAACTTATATGTTGAGTTGATGCTGGATTTCTGCAATTTAAAAATATTAATGGGATAATAATCCAGGGATAAATTTTGTTTTTACCTTAAGTGCTATGAAAACCTACCTTTTTGGGAGCACAACACACTGACTTTCTATATCACCACTTTCTTTGGCTTTCTGGTCTGCAGCAGAATCTTTCTTTCCATGAGCAGACTGCTGCTTCTCACTCTGCTCAACCTTTACCGCTGAATCTCCACTGGAACCATGATTCTTCTAAATGCAAAATAAACACAAAATGTCATAACTTAACTCCATGTTTGTAGTTTCTAGTAAAAGACCAATATATTGGTCTGGCCAATGAATCAACCAACATTTGGCCTGTCTGAGTTTATTCTATATATATATATATATTATATATATATATATATATATATATATATATATAGATAGATAGATAGATAGATAAATAGATAAAGAGAGAGAAAGAGACAGAGAGAAAGATAGAGAGAGGCAAATTTCAGAAAATGCAAAAAAATCAGATTAATAAGATTCATAATTTGTTTACATTATTAACAATATTTTTTATTTATCATTTCGATATAAATATATATTTAATTTTTGTTTACCTTGGATTTGCTCTGTGGGCCAAATACTATTTCCTGTGATGATTTCTGTGGTTCATCCTTCTGATTTCTTTTTGGTTTTAGGAGATGAAACATGCTGAACGCCTTTATTGGTTTCTGTTTCCCCACTTTCATCGTGTTTCTCAGATTCTGTTTTCTTCTGGTCAGAAAGAGCAGACTGCTGCTTCTCACTCTGCTCAACCTTCATCACTGCATCTCCACCGGAGATGCGATTCTTCTAAATGCAACATAAACACAAACTGTCATCATTTAATTTCCAGTAACAGACCAATTTATCAGTCTGGCCAATGAATCAATCAACATTTGTGCTCTCTGAGTTTGTCATTGTTAGCTGATAACCATGTCTAATTGGCCAAAGCTTTAGCTCTCTTTTATGCCAGTTCACAAATTTACTGACACATATTCTATTTGCAAACATATATACAATCCCCGGCCAAAAAAAAAGTCGCTATTTGAATTTTGATAGGCGAATACTACACAGTGTGTGTGTGTGTGAAACATTTATTATTATTATTATTATTATTATCAATATTGAAAACAGTTGTGTACAATTTCTTTCAGGATTCTTTGATGGATAGAAAGTTCAAAAGAACAGCTTTTTTTTTCATGTTCATACTTTTCAGTTGGCCAAGATTTCTAAAAATCCTTTCTTTGTATTGGTCTTAAGTAATATTCTAATTTTCTGAGATACTGAATTTGGGATTTTCCTTAGTTGTCAGTTATAATCAATATTAGAAATAAACATTTGAAATATATCAGTCTGTGTGTAATGAATGAATATATTATATATAAGTTTCACTTTTTGAATGGAATTAGTGAAATAAATCAACTTTTTGATGATATTCTAATTATATGACCAGCACCTGTATATTTATTCAGCAAGTATGCATTAAATTGATCAAAAGTGACAGTAAAGACATTTATAATGTTACAAAAGCTTTCTATATATACTGCACGGTTCTTTTATAAACAAATAAATAGTTACTGACCCCAAACCTTTGAACGGTAGTTTATAATGTTACAAAAGCTTTCCTTTTCAGGTAAATGCTGTTCTTTTGAACTTTCTATCCATCAAAAAAAATTGTACACCACTGTTTTCAATATTGATAATAATAATAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU375080 True 2470 lncRNA 0.33 3 4035606 4038297

Neighbor

gene id symbol gene type direction distance location
CI01000112_04031927_04033721 NA coding downstream 1776 4031840 ~ 4033830 (-)
CI01000112_03569282_03569449 NA coding downstream 465823 3569117 ~ 3569783 (-)
CI01000112_03506254_03517454 NA coding downstream 517975 3504455 ~ 3518742 (-)
CI01000112_03393172_03448154 PRKCA coding downstream 587452 3391852 ~ 3448154 (-)
CI01000112_03367247_03384263 CACNG5B, CACNG5, CACNG5A coding downstream 649722 3366873 ~ 3385884 (-)
CI01000112_04095809_04175244 NA coding upstream 56983 4095280 ~ 4175284 (-)
CI01000112_04190915_04191720 NA coding upstream 152427 4190724 ~ 4191720 (-)
CI01000112_04249185_04251352 GPRC5BA, GPRC5B coding upstream 210857 4249154 ~ 4251394 (-)
CI01000112_04289359_04311224 PROZA coding upstream 250620 4288917 ~ 4311224 (-)
CI01000112_04369901_04370950 NA coding upstream 331213 4369510 ~ 4371003 (-)
G329987 NA non-coding downstream 42017 3990981 ~ 3993589 (-)
G330363 NA non-coding downstream 59518 3975668 ~ 3976088 (-)
G330362 NA non-coding downstream 60253 3974832 ~ 3975353 (-)
G330361 NA non-coding downstream 60779 3974207 ~ 3974827 (-)
G329976 NA non-coding downstream 152282 3882235 ~ 3883324 (-)
G330377 NA non-coding upstream 60279 4098576 ~ 4098829 (-)
G330384 NA non-coding upstream 65941 4104238 ~ 4104501 (-)
G330857 NA non-coding upstream 110083 4148380 ~ 4148644 (-)
G330858 NA non-coding upstream 111699 4149996 ~ 4150261 (-)
G330889 NA non-coding upstream 148008 4186305 ~ 4186530 (-)
G330301 NA other downstream 267001 3758244 ~ 3773774 (-)
CI01000112_03068505_03072256 NA other downstream 962876 3067320 ~ 3072879 (-)
G329672 NA other downstream 2016153 2016704 ~ 2019453 (-)
G329569 NA other downstream 2037747 1991666 ~ 1997859 (-)

Expression


Co-expression Network