Gene
RNA
| Item | Value |
|---|---|
| gene id | G330384 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 4104238 ~ 4104501 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU375548 | True | 264 | lncRNA | 0.25 | 1 | 4104238 | 4104501 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000112_04031927_04033721 | NA | coding | downstream | 70408 | 4031840 ~ 4033830 (-) |
| CI01000112_03569282_03569449 | NA | coding | downstream | 534455 | 3569117 ~ 3569783 (-) |
| CI01000112_03506254_03517454 | NA | coding | downstream | 586607 | 3504455 ~ 3518742 (-) |
| CI01000112_03393172_03448154 | PRKCA | coding | downstream | 656084 | 3391852 ~ 3448154 (-) |
| CI01000112_03367247_03384263 | CACNG5B, CACNG5, CACNG5A | coding | downstream | 718354 | 3366873 ~ 3385884 (-) |
| CI01000112_04190915_04191720 | NA | coding | upstream | 86223 | 4190724 ~ 4191720 (-) |
| CI01000112_04249185_04251352 | GPRC5BA, GPRC5B | coding | upstream | 144653 | 4249154 ~ 4251394 (-) |
| CI01000112_04289359_04311224 | PROZA | coding | upstream | 184416 | 4288917 ~ 4311224 (-) |
| CI01000112_04369901_04370950 | NA | coding | upstream | 265009 | 4369510 ~ 4371003 (-) |
| CI01000112_04374111_04376875 | NA | coding | upstream | 269370 | 4373871 ~ 4376993 (-) |
| G330377 | NA | non-coding | downstream | 5409 | 4098576 ~ 4098829 (-) |
| G329970 | NA | non-coding | downstream | 65941 | 4035606 ~ 4038297 (-) |
| G329987 | NA | non-coding | downstream | 110649 | 3990981 ~ 3993589 (-) |
| G330363 | NA | non-coding | downstream | 128150 | 3975668 ~ 3976088 (-) |
| G330362 | NA | non-coding | downstream | 128885 | 3974832 ~ 3975353 (-) |
| G330857 | NA | non-coding | upstream | 43879 | 4148380 ~ 4148644 (-) |
| G330858 | NA | non-coding | upstream | 45495 | 4149996 ~ 4150261 (-) |
| G330889 | NA | non-coding | upstream | 81804 | 4186305 ~ 4186530 (-) |
| G330891 | NA | non-coding | upstream | 83333 | 4187834 ~ 4188205 (-) |
| G330899 | NA | non-coding | upstream | 94607 | 4199108 ~ 4199326 (-) |
| G330301 | NA | other | downstream | 335633 | 3758244 ~ 3773774 (-) |
| CI01000112_03068505_03072256 | NA | other | downstream | 1031508 | 3067320 ~ 3072879 (-) |
| G329672 | NA | other | downstream | 2084785 | 2016704 ~ 2019453 (-) |
| G329569 | NA | other | downstream | 2106379 | 1991666 ~ 1997859 (-) |
