XLOC_011246


Basic Information

Item Value
gene id XLOC_011246
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 8225655 ~ 8229883 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024592
ttttttagTTGTTTAATTTGCTTTATTCATATTAAATGCTGTTTGGATGATCAAATACTGCTCTTAACAGTAGTAGCATTTCATACATTTCAGGCAAAGAGTGAATCAGttattatgaaaaaatattatttagagtTATATGGGTATACATTTATAAAGCATCAAGAGTTCCTTGTGTATATAATAATTCATTACCTCTTATGCAGTGCGTCTGAGCAAAGTACAATAGATTATATATGAAATCTAATGGACTAGTGAAAGAATGGGATTTTTGTTACTTAACACAGATTACCCGTCTAGCCCTAGTTTGTGTGTGGCTGACCTcattaaacctgatttaacagATTTACCACCATTTCTACACATGTACAGGTttagaaaatacatttaacacattttcttAGTGAGATCCTTTAGCTCAAAACACTAAATcataggtcttaaactcaattcctggagggctgcagctcttcATAGTTTTGCTCCAAACGTAATCAAACACAGCTCATCCAACTAATCAATGTATTCAAGACTACTTGtgtttagaacaggggtgtccagactcgatcctgcatagtttagctccaacttccttcaacacgtTGCCtcgaagtttctagtatacatagaaagaacttgattagctggttcaagtgtgtttaattggggttggaacttaaATATGAAgcaaaccggccctccaggactgagtttgggcacccctggtctggTTGTCTTGAACAGCTTGATATGTTGGatgagctgtgtttgattagggttggagcaaaactgtgcagagatgcggccctcaaggaattgagtttgagacccatgctgTAAATGTTGTGAAAGAATACAAACAGAACtgttttgtataaatatatatattgtcagtTGTCATTAACCcttgtgctaaataaataaaaaggttcaTTCCCATGTGGAaaaattattt

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0042551 neuron maturation biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0006810 transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098793 presynapse cellular_component
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024592 True 955 lncRNA 0.36 2 8225655 8229883

Neighbor

gene id symbol gene type direction distance location
XLOC_011244 tulp4b coding upstream 14643 8183393 ~ 8211012 (+)
XLOC_011243 myct1b coding upstream 46503 8175998 ~ 8179152 (+)
XLOC_011242 BX927406.1 coding upstream 135181 8090357 ~ 8090474 (+)
XLOC_011241 ccdc170 coding upstream 383446 7821890 ~ 7842209 (+)
XLOC_011240 akap12a coding upstream 442067 7763630 ~ 7783588 (+)
XLOC_011247 si:ch211-236p5.2 coding downstream 40981 8270864 ~ 8287309 (+)
XLOC_011248 si:ch211-236p5.3 coding downstream 61678 8291561 ~ 8305792 (+)
XLOC_011249 BX248131.2 coding downstream 70507 8300390 ~ 8300504 (+)
XLOC_011250 NA coding downstream 78707 8308590 ~ 8315457 (+)
XLOC_011251 cdc42bpaa coding downstream 93465 8323348 ~ 8477315 (+)
XLOC_011239 BX088649.1 non-coding upstream 478495 7741616 ~ 7747160 (+)
XLOC_011238 BX511121.2 non-coding upstream 564331 7661208 ~ 7661324 (+)
XLOC_011232 NA non-coding upstream 778874 7446509 ~ 7446781 (+)
XLOC_011231 CABZ01057751.1 non-coding upstream 905490 7320042 ~ 7320165 (+)
XLOC_011252 FO818681.1 non-coding downstream 242218 8472101 ~ 8472217 (+)
XLOC_011259 NA non-coding downstream 1686880 9916763 ~ 9942723 (+)
XLOC_011269 NA non-coding downstream 2541970 10771853 ~ 10775305 (+)

Expression


Co-expression Network