G330595


Basic Information

Item Value
gene id G330595
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 4640950 ~ 4714414 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU375786
ACTGCGAGTGTGTGTGCGCGCGCTTCTCTGACTCTTGATACATTATAGCGAAACACAAGATTTCATCCGGACCTTCGTCTGAGTCTCTCAGTTTAATAACAGGACGTCGTTCACGAGTGTGAAGATCTTCATCCGCGGGCGCACTGGATGATGTGGAGATGTGTTTGTAAAGTGCGGCACGTGGGTCCACAGCTTCATTCAAGGAGATAAACCGGATGACTTTCTGGATTCATGTGGTTGTGGATTCATTCTTGCTTCAGTCTGTTTGGATGCTAACGGCTCAGATACGTGCTTTGTGAATGTGACCATGATTAAATCCTGTATTTTTGGGATACTGGCGTGTCTCGCTCCAGTGGAGCTGCATATGACTTCTGGAATAACTTAACATGTGGAATAAACTTACTTTTAAGAATGAAGGATTAACAGAAGTACGAGAAGAAGCACAAACTCCTCAGCAGAAACAAATGCTTTGGTAGTATCTGAAGAGAGCCATGGATGAGTATGATGAGAACACAGGGGATTTGAGGATTGGTGAGAGATATTTGGAGATGGCTATTTCATAAGTGGATTTAAGACATTGCTACGGCTTTCCGTTGTGTGGGACAAACATCGACGCCGTTTCCTTTTACCATGCTTTGACTGCAAATACTGGATTACCTGGACTGTTTTCTACTTTATCATTTTTTCCCTTCTGATTGGTCAGTAAACTGTTCCAGTGATGCTAAAATGCACAATATAATAACAGCGATGATGCTGAAACTATTGTTGACTATCCGCACCCATAGAGACCCTATTAACCTTAGTTTATGTGATCTAGTGATCTAGTTTTCATAAAAATTGTGCTAATATTTTAATATAGCAATGTCATTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTAAGGCACTTGGGGTTGTTATATTGTGAACAATGACGCTTGTGGCACTATTTAGCCATGATGACTACGTGCACAATTTACCGCAGTTTATTGCTGTATTTTATTAAGTTTTTTTTTTTTTTGCATTCATGGTTGTATAACTGATTTGATTTATATGCATATTAACTCATTTAAAAATGATTTTATTTTTTTATTTTTTGCCTGAATACAAAAAATTAAGTGGATTGAAAAATTTGTCATGATGTTAAGAACTGTAAAAATGACATGCACGATATTAAAAGTTAATAAAAAGAAACCTTTCATAATTAAA
>TU375787
ACTGCGAGTGTGTGTGCGCGCGCTTCTCTGACTCTTGATACATTATAGCGAAACACAAGATTTCATCCGGACCTTCGTCTGAGTCTCTCAGTTTAATAACAGGACGTCGTTCACGAGTGTGAAGATCTTCATCCGCGGGCGCACTGGATGATGTGGAGATGTGTTTGTAAAGTGCGGCACGTGGGTCCACAGCTTCATTCAAGGAGATAAACCGGATGACTTTCTGGATTCATGTGGTTGTGGATTCATTCTTGCTTCAGTCTGTTTGGATGCTAACGGCTCAGATACGTGCTTTGTGAATGTGACCATGATTAAATCCTGTATTTTTGGGATACTGGCGTGTCTCGCTCCAGTGGAGCTGCATATGACTTCTGGAATAACTTAACATGTGGAATAAACTTACTTTTAAGAATGAAGGATTAACAGAAGTACGAGAAGAAGCACAAACTCCTCAGCAGAAACAAATGCTTTGTGGGTCCACCCTGACTTCGCATGGCTCTTCCTGAAGAAAGGAAAAGCCCTGATGTGCTTGTCACCCGAGCTGACGGCCGGGGCTGCGTGATGGAGGCCGAATGTCTTCACTTGGTCCCTCTTCAGACACTCAATGGCTGCTCTGTTTCAGCCTGACGACGAGTTGATTGGATATAATCTTGAGCGCTGGACTCAGGAGATCGGGAGGGATAGGGAAACTCTACAGTAGGCTTTGCAGGGAAGGATCATCTTTCTCCAGAAGTAGGAAACGAGCGTCGGAGGGTTCCTGCTGCCAGTCGGCTCTCTCCTCCTGTTACGACACGGGACCAAATTCAAACCATGTGTCCTCGCACCCGCTTAGCTGATTTTGCCCACCTCTAGCATTAGCAGTCTGGACGGATCCATTTCACTGCCCCTCTCCTGTGCAGCGTTCTCATTCTCCCAGCCCCAAATGAGCCTCTCCGTGGGACTCCTGGCTTAATAGGCTGGAACTTTCCCATGTCCGGTCTCCGAAGGAGGCTGTTATCCTCTGAGTGCCTCTCTGCGAGATTCAAACTGGAGCTCATGTCATGGGGTAGTATCTGAAGAGAGCCATGGATGAGTATGATGAGAACACAGGGGATTTGAGGATTGGTGAGAGATATTTGGAGATGGCTATTTCATAAGTGGATTTAAGACATTGCTACGGCTTTCCGTTGTGTGGGACAAACATCGACGCCGTTTCCTTTTACCATGCTTTGACTGCAAATACTGGATTACCTGGACTGTTTTCTACTTTATCATTTTTTCCCTTCTGATTGGTCAGTAAACTGTTCCAGTGATGCTAAAATGCACAATATAATAACAGCGATGATGCTGAAACTATTGTTGACTATCCGCACCCATAGAGACCCTATTAACCTTAGTTTATGTGATCTAGTGATCTAGTTTTCATAAAAATTGTGCTAATATTTTAATATAGCAATGTCATTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTAAGGCACTTGGGGTTGTTATATTGTGAACAATGACGCTTGTGGCACTATTTAGCCATGATGACTACGTGCACAATTTACCGCAGTTTATTGCTGTATTTTATTAAGTTTTTTTTTTTTTTGCATTCATGGTTGTATAACTGATTTGATTTATATGCATATTAACTCATTTAAAAATGATTTTATTTTTTTATTTTTTGCCTGAATACAAAAAATTAAGTGGATTGAAAAATTTGTCATGATGTTAAGAACTGTAAAAATGACATGCACGATATTAAAAGTTAATAAAAAGAAACCTTTCATAATTAAA

Function

NR:

description
ribosomal protein S6 kinase alpha-4-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU375786 False 1208 lncRNA 0.37 2 4640950 4714414
TU375787 True 1781 lncRNA 0.42 3 4640950 4714414

Neighbor

gene id symbol gene type direction distance location
CI01000112_04579149_04582002 NA coding upstream 58786 4579149 ~ 4582164 (+)
CI01000112_04561557_04563086 NA coding upstream 77760 4561455 ~ 4563190 (+)
CI01000112_04346478_04353682 NA coding upstream 286651 4345703 ~ 4354299 (+)
CI01000112_04264297_04265684 NA coding upstream 374978 4263713 ~ 4265972 (+)
CI01000112_04055598_04089942 NA coding upstream 550414 4055598 ~ 4090536 (+)
CI01000112_04918167_04937803 NA coding downstream 203567 4917981 ~ 4938884 (+)
CI01000112_05076817_05101845 NA coding downstream 362403 5076817 ~ 5101845 (+)
CI01000112_05102672_05120797 NA coding downstream 388258 5102672 ~ 5120871 (+)
CI01000112_05163850_05164401 NA coding downstream 449436 5163850 ~ 5164530 (+)
CI01000112_05172320_05174322 NA coding downstream 457774 5172188 ~ 5174477 (+)
G330644 NA non-coding upstream 4491 4636239 ~ 4636459 (+)
G330643 NA non-coding upstream 10185 4630435 ~ 4630765 (+)
G330627 NA non-coding upstream 49914 4590768 ~ 4591036 (+)
G330621 NA non-coding upstream 64887 4575841 ~ 4576063 (+)
G330619 NA non-coding upstream 68685 4571894 ~ 4572265 (+)
G330616 NA non-coding downstream 6986 4721400 ~ 4721692 (+)
G330608 NA non-coding downstream 36105 4750519 ~ 4816182 (+)
G330598 NA non-coding downstream 90838 4805252 ~ 4845255 (+)
G330704 NA non-coding downstream 136455 4850869 ~ 4851338 (+)
G330710 NA non-coding downstream 145288 4859702 ~ 4860397 (+)
G329194 NA other upstream 1709061 2920254 ~ 2931889 (+)
G329125 NA other upstream 2022799 2617704 ~ 2618151 (+)
G328456 NA other upstream 3407832 1232022 ~ 1233118 (+)

Expression


Co-expression Network