XLOC_011248 (si:ch211-236p5.3)


Basic Information

Item Value
gene id XLOC_011248
gene name si:ch211-236p5.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 8291561 ~ 8305792 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022448
TGGTAAACTTCTTATTATCCAAGaccgccatctagcggtcacataacctaatagcatgttCCTTGTTACTAACCACCCCCACGGCCGAAAGGTCCAGCATGtgaccttttaattattttatgtaatttaatattatataatatatttattatataagtaATATAATTATTCATATTCAATGTATATTCccgtcacgtctgtgtttttgaggctgtttggtcacttcattcgttttattCTGATCAGATATCTGATCTCTTAAACCAATTCAGAAGGTGATCTTGGATGCATTCCGCATGAAACTGGACAGGTATGATCACTTttacacataaataatataaataaataattatgactTAGAGAAATTTTGACCTGTGCCTGAAACACCTGTAAGTgcgcttttacagccaaaattctattaaaaacatgtttactaatGTTCACCTATTTCAGAATACGCTGTTTTCATTTTATCCCACATAGAGTGAGAGCATTACTGTAAACATAGGCtacttttcttttgtgtttacatttgGATTAGATGTGGTCAACATCAGAAAGTAACCGGTTCATCTACGCAGGTGtttctcacacgcacacacacacaacgaaaGAGAGGGCACACACAGCTGGACAGAGGTTTGTTGCAATTTATTACACAGACTTCTACCATTTTTATATGAAGTTATTGATACTCATTTTATTGATGGCCTGCCCTAACCCTACACCTAGCCTACCCCTATAAGCTTAACCATCAAACCTGCTGTTTAAGTCTATTTGTTTGCCCTTCCCTAACCAGTCAAGCGTCATAATCATTTGTATAACCTGTTTGACCGGTTTATATCAAAAGTGAAAGTTTCAGCAGAATACATTTTGTCAGACAGCTGAACGACATCGCAAAAGCTGTTTGTGAATAAGTATGAGAACATATAATGCTACAGAGACGGAATGGATTTATGAATTGAATGTATAGTTTGTAGTTGATAAACTATTGAACTTCATCGTTGAGATAGAGGAAACACTTCTGTTGAAGTGGGAGATTATATAAAATGAGTCTCTATGAGAAAAAAGATGAGAAACATCCAGAACCCAGCTGTGTGTCGGTGAAGAGTGACAGATCCATGGAATTTCCCCCTAAATTCAGTGACGAAGGAGTGGCATCTGACCATGAtatTAGCTGTCTCTGTGAGAAGGGAGGGGAGGATGGTGTTCAGACACATAAAACAGCATCTCCAGAGCCCAGTTGTGTGTCTGTGAAGAGTGACAGATCCATGGAATTTCCACCTAAATTCAGTGATAAAGCAATGACCTCTGACCATGAAGTAATGAATGATAAAGCAATCATATCGGTGAAACCCCGTCTGACCTGCATTGATTTTCAAACCCTCAACAGACAAAGAGTCAAAGACCAACACAAAACTAGCATGAAAGACAAGtgtgagagattatttgagggaattAAACTAGAAGAGAACcaaaccctcctgaacaggatctacacacagctctacatcatagagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACACAAGACACTCCAATCTACTGCAATGACATATTTAAACCCTTACAAGAACCAGAACATGAGGAGAAAGaccagatcaagactgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagttcattctagACTGGAGTGAAGGAAAAgccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttcaAGATCTGGACTCAGAGATGTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcccACTGAAGTTTTCAGACAGACGGAAAGTTAGTGATGTGAATGAgtcttcatcagtggctgtgttgatgtcaAACCTTATCAgaggagatctgcttccctctgctcacatctggatcacctccagaccagcagcagccaatcagatcccCTCAAAATACATCAACCGTCTGACAGAAATTCTGGGATACAATGAttctcagaaggaggaatatttcaggaagaaaATCAGCGAtgagcatcaagccagcagaatcatctcccacatcagaagatCCAGAAGCCTCCACATCATGTgtcacatacccgtcttctgctggatctcagccactgtgcttcagaagctcctgaaTGAAGATGACAgagcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgactcagatcaacatgaggaaccagaagtatgaagagagagatccagagaatcTCCTGGAGTCCAGCAGAGAGATGATCGTGAAACTCGCTGAACTGGCTTTCaaacagctgatgaagggcaatgtgatgttctatgaagaggacctgattgagagcggcatagaTGTCACCAGTGCTGCAGTGTATTCTGGGATTTGCACTGAGATCTTTAAGGAGcaatctgtgattcatcagaggaaagtctacagcttcattcATCTGAGCTTTCAGGAGTTTCTcgctgctttctttgtgttttactcaTATGAAGTCAAGAATAAAGAGTCACTGAAGTTATATCTGAAGGGATATAAATGGTACAGCCGAGAAATCTCTCTGTTTGATCTACTTGAAGGCTCCATTGAAAAATCATTGCAGAGTGAAAATGGACATCTGGATCTTTTCCTGCGGTTTCTGCTGGGAATCTCACAGGACTTTATTCAGAAGCTCTTGCAGGATCTATTGACACACACAGAGAACAGTTCAGAAAGCATTAGAAGAATCACACGGTACATTAAAGATAAAATCAAAGGTGATGAACATCTCTCAGCTGACAGATGcgtcaatctgttcctctgtctgctggaaaTAAATGATCAGACTCTGTACAGAGAGATTCAGAAGTTTGTGAAATCACAGAATTGCTTAGTGGAGAAGCTTTCTCCGTCTCACTGTTCAGCAATCTCCTACATGCTTCAGATATCTGAGGTGGTGCTGGATGAGTTTGATCTGAAGAAATACAACACATCAGATGAGGGTAGAAGGAGACTGTTACCAGCTGTGGTGAACTGCAGAAAAGCTCAACTTGCTCGCTGCAATCTGACTGATCAGTGCTGTAATAGTTTGTTTTTATCTCTACAATCATCAAACTcactgagagagctggacctgagtcaCAATGACCTGCAAGActcaggagtgaagctgctctctgatggactgaagagttcACAATGTCAACTGGAGATACTGAGattatctggctgtatggtgacagagaaAGGCTGTTGTTttctggcttcagctctgagattaaacccctcacacctgagagagctggatctgagctacaataaACCAGGACAATCATTAGTGGAGCTAATCTCTGATAAAAACTACAGACTGGACAAGCTCAACATGGATAATGCAGCAGCATGCAGGATTACAACAGGACTACAGAAATATGCAAGCCAGCTCACACTGGatgtaaacacagcacacacttaTCTCATTCTGTCTAATCGGGAAAGAATGGCAACACTTGTGACAATGAAGCAGttgtatcctgatcatccagagaGATTTGATGAGAGTCATCAGGTTCTGTGTAAAGAGAGTCTGACTGGACACTGTTACTGGGAGGCTGAATGGAGCGGGGACGAAGGAGTTAATATGTCAGTGGCATATAAAGGAATCAGCAGGAAAGGAGGGGGTGAAGAATCTTGGTTTGGATATAATAAAAGGTCATGGAGTCTGATCTGTTTCAAGAACAGATTGATTGCCAAGCACAATAATAAGATCACATTTATAGATGTCCCTTCATGTCCATTTAGTAGAGTAGGAGTGTATCTGGATTGGCCTGCTGGCACTCTGTCCTTTTACAGCGTCtctgacacaaacacactcacacacttacacacatttaACACCACATTCACCGAGCCACTCTATGCTGGATTCGGGCTTTATTTTGGTAGTTCAGTGTCTTTGTGGGAGATTAAACAACACAGATGAGttatagaaacacacacaaataatgtcTGTCTTTAAATCAGTTAATTTTAGCATGTATATactgattttaatgcattaatttatatttactaatgagactttaGTCTTACCTATTGTATTTTACCCTTcgtttctatttattttgttcaaagcatttatttattatgagtatatacagttgaagttagaattattagcccccctgaattataagaccgcttgtttattttttcccaaatttctgtttaacggagagaagatttttttcaacacatttctaaacataatagttttaataactcatttctaataactgatttattttatctttgccatgatgacagtgaataatatttgacttgatatttttcaagaaacttctatacagcttaaagtgacatttaaaggcttaactaggttaattaggttaactaggcaggttagagtaattaggcaagttattttataacgatagtttgttctgtagaatatcaagaaaaatatatagcttaaaggggctaataattttgtccctaaaatggtgattaaaaaaatcataactgcttttattcttgccgaaataaaacaaataagatttgcctgctctgataaacatattttagaaaatatattaaaaagaagGTAAacatttaaagggggctaataattctgacttcaactgtatctataatgaagcaataaactaaatatttttgtgttattatacatattaaagtTTTTTGTAGCTTAGGTCAATATCATAATAATACTGTATCGTAATAAACGCTTCAGCAATTAAATGCAACAATAAAATCTGAAACTGGCAGAAGCCTATTGTAAACACAGTTGAAAGTGGCTTATTactaaacatgacagaaattgttttgttttagaatCCAACGATTGACTTTATAGCTTGTAGTTTAGtgaatgttttgaaatatttgttgAGATGACTGAGAAAAGCTGTTTTTACTGCACGTTTGCATGTTTTTCATTAACTATGGAAGTCCATTCCCACCACCgaataaaaataaaggttattgCAACGTTTACATCTCTTGTGaaactcataattctgactttgtttctcagaattgtgagatgtaaactcgAAATTGCAAGTTATAAATTCAGAATTGCAACATATCAACTtacaattctgagaaataaattcacaatcacttttttcattttattcaatgGTGGGAACATACTTCCATACATAGCATATAGGCTATTCAAGACTGAAAGGGtggtaaatgtaaaaatacataatGATGTACATGAAAATTGATTCAAacttcaaaaataaaagttttacatttctgtaaCGCTCCCTGTTAGTAGTGTTTTAAGTGTGTTTTAGTGTGTTCTGAATGAGAATTGTTGTCAGTGGTTTGGTGAAAAGGTTCTGAGACGAACTCACGTGTTTGTCTGGCTGCATGAGTTTTGAGGAGAGCTGAACTGAAACCAAAAGCATTAAATAATATAgtaaacatttgaagtggatcaa
>TCONS_00022449
ATGAGTCTCTATGAGAAAAAAGATGAGAAACATCCAGAACCCAGCTGTGTGTCGGTGAAGAGTGACAGATCCATGGAATTTCCCCCTAAATTCAGTGACGAAGGAGTGGCATCTGACCATGAtatTAGCTGTCTCTGTGAGAAGGGAGGGGAGGATGGTGTTCAGACACATAAAACAGCATCTCCAGAGCCCAGTTGTGTGTCTGTGAAGAGTGACAGATCCATGGAATTTCCACCTAAATTCAGTGATAAAGCAATGACCTCTGACCATGAAGTAATGAATGATAAAGCAATCATATCGGTGAAACCCCGTCTGACCTGCATTGATTTTCAAACCCTCAACAGACAAAGAGTCAAAGACCAACACAAAACTAGCATGAAAGACAAGtgtgagagattatttgagggaattAAACTAGAAGAGAACcaaaccctcctgaacaggatctacacacagctctacatcatagagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACACAAGACACTCCAATCTACTGCAATGACATATTTAAACCCTTACAAGAACCAGAACATGAGGAGAAAGaccagatcaagactgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagttcattctagACTGGAGTGAAGGAAAAgccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttcaAGATCTGGACTCAGAGATGTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcccACTGAAGTTTTCAGACAGACGGAAAGTTAGTGATGTGAATGAgtcttcatcagtggctgtgttgatgtcaAACCTTATCAgaggagatctgcttccctctgctcacatctggatcacctccagaccagcagcagccaatcagatcccCTCAAAATACATCAACCGTCTGACAGAAATTCTGGGATACAATGAttctcagaaggaggaatatttcaggaagaaaATCAGCGAtgagcatcaagccagcagaatcatctcccacatcagaagatCCAGAAGCCTCCACATCATGTgtcacatacccgtcttctgctggatctcagccactgtgcttcagaagctcctgaaTGAAGATGACAgagcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgactcagatcaacatgaggaaccagaagtatgaagagagagatccagagaatcTCCTGGAGTCCAGCAGAGAGATGATCGTGAAACTCGCTGAACTGGCTTTCaaacagctgatgaagggcaatgtgatgttctatgaagaggacctgattgagagcggcatagaTGTCACCAGTGCTGCAGTGTATTCTGGGATTTGCACTGAGATCTTTAAGGAGcaatctgtgattcatcagaggaaagtctacagcttcattcATCTGAGCTTTCAGGAGTTTCTcgctgctttctttgtgttttactcaTATGAAGTCAAGAATAAAGAGTCACTGAAGTTATATCTGAAGGGATATAAATGGTACAGCCGAGAAATCTCTCTGTTTGATCTACTTGAAGGCTCCATTGAAAAATCATTGCAGAGTGAAAATGGACATCTGGATCTTTTCCTGCGGTTTCTGCTGGGAATCTCACAGGACTTTATTCAGAAGCTCTTGCAGGATCTATTGACACACACAGAGAACAGTTCAGAAAGCATTAGAAGAATCACACGGTACATTAAAGATAAAATCAAAGGTGATGAACATCTCTCAGCTGACAGATGcgtcaatctgttcctctgtctgctggaaaTAAATGATCAGACTCTGTACAGAGAGATTCAGAAGTTTGTGAAATCACAGAATTGCTTAGTGGAGAAGCTTTCTCCGTCTCACTGTTCAGCAATCTCCTACATGCTTCAGATATCTGAGGTGGTGCTGGATGAGTTTGATCTGAAGAAATACAACACATCAGATGAGGGTAGAAGGAGACTGTTACCAGCTGTGGTGAACTGCAGAAAAGCTCAACTTGCTCGCTGCAATCTGACTGATCAGTGCTGTAATAGTTTGTTTTTATCTCTACAATCATCAAACTcactgagagagctggacctgagtcaCAATGACCTGCAAGActcaggagtgaagctgctctctgatggactgaagagttcACAATGTCAACTGGAGATACTGAGattatctggctgtatggtgacagagaaAGGCTGTTGTTttctggcttcagctctgagattaaacccctcacacctgagagagctggatctgagctacaataaACCAGGACAATCATTAGTGGAGCTAATCTCTGATAAAAACTACAGACTGGACAAGCTCAACATGGATAATGCAGCAGCATGCAGGATTACAACAGGACTACAGAAATATGCAAGCCAGCTCACACTGGatgtaaacacagcacacacttaTCTCATTCTGTCTAATCGGGAAAGAATGGCAACACTTGTGACAATGAAGCAGttgtatcctgatcatccagagaGATTTGATGAGAGTCATCAGGTTCTGTGTAAAGAGAGTCTGACTGGACACTGTTACTGGGAGGCTGAATGGAGCGGGGACGAAGGAGTTAATATGTCAGTGGCATATAAAGGAATCAGCAGGAAAGGAGGGGGTGAAGAATCTTGGTTTGGATATAATAAAAGGTCATGGAGTCTGATCTGTTTCAAGAACAGATTGATTGCCAAGCACAATAATAAGATCACATTTATAGATGTCCCTTCATGTCCATTTAGTAGAGTAGGAGTGTATCTGGATTGGCCTGCTGGCACTCTGTCCTTTTACAGCGTCtctgacacaaacacactcacacacttacacacatttaACACCACATTCACCGAGCCACTCTATGCTGGATTCGGGCTTTATTTTGGTAGTTCAGTGTCTTTGTGGGAGATTAAACAACACAGATGA

Function

symbol description
si:ch211-236p5.3 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081028-31 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000086418

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022448 False 5628 mRNA 0.38 8 8291561 8305792
TCONS_00022449 True 3063 mRNA 0.43 7 8292892 8304276

Neighbor

gene id symbol gene type direction distance location
XLOC_011247 si:ch211-236p5.2 coding upstream 4252 8270864 ~ 8287309 (+)
XLOC_011246 NA coding upstream 61678 8225655 ~ 8229883 (+)
XLOC_011245 slc18b1 coding upstream 62849 8211992 ~ 8228712 (+)
XLOC_011244 tulp4b coding upstream 80549 8183393 ~ 8211012 (+)
XLOC_011243 myct1b coding upstream 112409 8175998 ~ 8179152 (+)
XLOC_011250 NA coding downstream 2798 8308590 ~ 8315457 (+)
XLOC_011251 cdc42bpaa coding downstream 17556 8323348 ~ 8477315 (+)
XLOC_011252 FO818681.1 coding downstream 166309 8472101 ~ 8472217 (+)
XLOC_011253 CU462878.3 coding downstream 236411 8542203 ~ 8545189 (+)
XLOC_011254 edrf1 coding downstream 448228 8754020 ~ 8796333 (+)
XLOC_011242 BX927406.1 non-coding upstream 201087 8090357 ~ 8090474 (+)
XLOC_011239 BX088649.1 non-coding upstream 544401 7741616 ~ 7747160 (+)
XLOC_011238 BX511121.2 non-coding upstream 630237 7661208 ~ 7661324 (+)
XLOC_011232 NA non-coding upstream 844780 7446509 ~ 7446781 (+)
XLOC_011259 NA non-coding downstream 1610971 9916763 ~ 9942723 (+)
XLOC_011269 NA non-coding downstream 2466061 10771853 ~ 10775305 (+)
XLOC_011272 FP102895.1 non-coding downstream 3068982 11374774 ~ 11374896 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_04543653_04551134 NA coding CI01000112 null 4543617 ~ 4551134 (-)