CI01000113_00077172_00080517


Basic Information

Item Value
gene id CI01000113_00077172_00080517
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 75223 ~ 80517 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_00077172_00080517.mRNA
ATGGGAAGACCAAGTGACGTGAGCGACAGGAGAAGATGGAGTGTGCGAGTACTTGAAAAAGGGAGCAAAAACATAAAGGAGAAGAGGAAGAGCAAGAGGGAGGGGGGATATGCCATTGGCAGCTCTCGCTTTCATTCAGTGATAACAGAACCCCTGGAGAGTAGCACTCTGGACAATGACATGATGATCATAGGGGGCACAGAGGAAAGGATTTGTGCCAGCTGGATGCTTGTTGCCTGTTCTGCGAGTGCACACCAACACCCTCGACGACTGCCTCTCTCTCTCCTTGCCCGGGCATTTAGCACCTGGCTGATTGCTGGATGCAGGGAGGGGGGTCAGAGGAGGGTGCATTACAGCGAACTGTGTCTCATCAGTCCCCGCTCTGACTCACAGAGATATTTAAGGGAGCATGTGGAACACTCTCTTCCAGCCGCTAGTGTCTTGGTGAAACCTCCTGATGTTCCCCCAAACGACATTCCACCGTTCTACCTATTCCCTCGAGACAGGCTGTGCCCTGTGTCACAGTCCCGCACAAACATGCAGGCAGTGCTGAAAGAGGCAGGTTGGCCAGGCTGCGCTTCCTGGCGTGAAGTCATCTTGCCGGACACCGTGCTCCAGTCAGATAAGAGAGCTAGGGATTACAGCAGATTATCTGACAGACAGGATCAGAAGCACCCCATTGAAAGTGTCCCAACAGTGAGAGCTCTACCATTACAGACAAGCCAGGCATCTGCCCTCAGGAAGAGGCTTTAAAGCCTTGATACCATTGATTCAACTGTACAGTCATTTCTGTGAGAGCCATTGAGAAGATTGCTTTTACTATCTATATTATGGCTGGATGCTTTTCCAAATTCCATATAAGCCTCAGCTTTGTGCATGGAGTGACTCTTCTGTGGTGCGCGAAGTCAGAGTCCTGTACAGACATGATAGGCTGCCACAAACTTGTTTTACTACCATCCTGCTCACTGTCTATTTCCGATTTCCCTGAGCAACACCGCATCATTCATTCGTGCTGTTATTTGTCTTTTGCTTGATATCTCTATTTTCATGCAAATCCTCATGGGATACCTATCAGTTCGTATTAGCCAAATGATTTCAGCACACTCCTTACTTCAAAAACAGTACCCCGTCTTTGCTATAAATACACCCCAGAAAATTTTGTCAGCATTTACACATCTACATGTCATTCCAAATGTCACTTTCTTTCTTCCACAGAAGACAAAAAGAGAAGTCTGGGCTTAAAGGCTGAAACTTTCAAGCTTTAAAAGGACATAAAACCATTAAAGTATTATAACAGTTGTACACTATAGTCCAAGGCTTCTGAAGTCATATGGTAGCTTTGTGTGATAAACAAAAGTCTTAATTTACTTAATTGAGTCTTAATCCACAGAAAATCCTGACATCCGCCCAACTCTCCTTGGTGCGCTCATGAGAAAAGAAATGATGCCTGATTCATAAACTAATTGTTTGAGTCAGACCTTTTAAATTAATCGGATGATCTGGTTTATAAAACCAGTCTGCATTATTTATTTACTATACTGAAAGGGTTAGTTCACCCAGAAATTCTGTCATTAATTACTCACCCTCATGTCGTTGCACAAGCATAAGACCTTCGTTCATCTTCAGAATACAAATTAAGATATTTTCATAAAATCCGATGGCTCAGTGAGGCCTCCATTGCCAGCAAGACAATTAACACTTTCAATGCCCAGAAAGCTACTAAAAACGTATTTAAAACAGTTAATGTGAGTACAGTGGTTCAACCTTAATGTTATGAGCGAAGAGAATACTTTTTGTGCACCAAAAAAAAAACAAATAACGACTTTATTCAACAATATCTAGTGATGGGCGATTTCAAAACACTGCATGAAGCTTCGAAGCTTTACGAATCTTTTGTTTTGAACCAAACTACCAAAGTCACGTGATTTCAGTAAACGAGGCTTCGTCACATCATAAGTGTTTCGAAATTTCAGTAGTTCACCACTGGGGGGCATGAGTTTGGCAGTTTGATATTGCCTCCGAACCACTGATTCGAAACAAAAGATTTGTAAATCTTCAAACTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTCACCAATTTTTTTTTTTGTTTTTTTTTGCCGCACAAAAAGTATTCTCATTGCTTCATAACATTAAGGTTGAACCACTGTAGTCACACAAACTGTTTTAAATACATCTTTAGCTTTCTGGTCATTGAAAGTGTTAATTGCCTTGCTGGCAATGGAGGCCTCATTGAGCCATTGTGAAAAATATCTTAATTTGTGTTCTGAAGATGAATGAAGGTCTTATGAGTGTAGAACGAAATAAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTGAAGATTGTTAGTGAATAACAATATAAATTTTAAACTGTATCTCACACAACTTCTCATGACTTTTATGCTGATTTTGCATATCTTTTTGAAGCTTTAAAGTATCAGTCGCCATTCATTGTAATTGAATGGAAAAGATGATCCAGTCTTGCAGTTTCATCTTTTGTGTTCCAGGGAACAAAGACAGTCATACAAGTTTAGAACAATTATCTTATTGCTTAAAATTATTGCTTAAAATCGTTCAAAAATGATGCCTAAAATATAATCCTTGTTGTGAACAGTGTTCATTTCATATGCGGAATAAA
>TU377695
CGCTTCCTGGCGTGAAGTCATCTTGCCGGACACCGTGCTCCAGTCAGATAAGAGAGCTAGGGATTACAGCAGATTATCTGACAGACAGGATCAGAAGCACCCCATTGAAAGTGTCCCAACAGTGAGAGCTCTACCATTACAGACAAGCCAGGCATCTGCCCTCAGGAAGAGGCTTTAAAGCCTTGATACCATTGATTCAACTGTACAGTCATTTCTGTGAGAGCCATTGAG
>TU377696
CTTTCAGTTAATGATTAACGCCTCCCCCGACCCCCAACCACCACCACTCGCCCATTCCCAGCATGGCAGCCTGAATGGAGAGTGACAGTTATTTCCTGCCTCCACTTTCTCTGCTGCCAAGCGCAGATGCTTGTTGCCTGTTCTGCGAGTGCACACCAACACCCTCGACGACTGCCTCTCTCTCTCCTTGCCCGGGCATTTAGCACCTGGCTGATTGCTGGATGCAGGGAGGGGGGTCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_00077172_00080517.mRNA False 2702 mRNA 0.41 5 75223 80517
TU377695 False 231 lncRNA 0.49 1 77119 77349
TU377696 True 242 lncRNA 0.57 1 77788 78029

Neighbor

gene id symbol gene type direction distance location
CI01000113_00122344_00130639 ELAVL3 coding upstream 41337 121854 ~ 130707 (-)
CI01000113_00254945_00255661 HBAA1 coding upstream 174341 254858 ~ 255709 (-)
CI01000113_00268929_00271262 NA coding upstream 188331 268848 ~ 271294 (-)
CI01000113_00283931_00284691 NA coding upstream 203345 283862 ~ 284723 (-)
CI01000113_00301490_00302258 NA coding upstream 220891 301408 ~ 302281 (-)
G332223 NA non-coding downstream 2884 72081 ~ 72339 (-)
G332217 NA non-coding downstream 14466 60326 ~ 60757 (-)
G332216 NA non-coding downstream 15633 59245 ~ 59590 (-)
G332215 NA non-coding downstream 19108 55816 ~ 56115 (-)
G332214 NA non-coding downstream 21039 53806 ~ 54184 (-)
G332229 NA non-coding upstream 1383 81900 ~ 82116 (-)
G332230 NA non-coding upstream 2420 82937 ~ 83461 (-)
G332231 NA non-coding upstream 3025 83542 ~ 83843 (-)
G332264 NA non-coding upstream 129064 209581 ~ 210858 (-)
G332283 NA non-coding upstream 156533 237050 ~ 239053 (-)
G332210 NA other downstream 25738 47990 ~ 49485 (-)
G332160 NA other upstream 309710 390227 ~ 446837 (-)
G332649 NA other upstream 2066697 2147214 ~ 2148558 (-)
G332837 NA other upstream 2170328 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 2287099 2356565 ~ 2370009 (-)
G332227 NA non-coding upstream 430 78459 ~ 78849 (-)

Expression


Co-expression Network