CI01000113_00122344_00130639 (ELAVL3)


Basic Information

Item Value
gene id CI01000113_00122344_00130639
gene name ELAVL3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 121854 ~ 130707 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_00122344_00130639.mRNA
AATGCGAGACAAAAAGTGATTTTAACCGAGCACTAGTTCTCGAACATCACTCCAAGCGCACATACAACATGCACACATATGTGCAATGTTTGCTAAAAGTCAAGAAGCCAGCCAATAGCAGCAGTCGTCAAGCTGCTGTTACCTGGGCAACCTGGTTAGAGATAATTAGCACCATGGAAACTCAGGTGTCCAATGGTCCGAGCGGAACCAGCCTGCCTAACGGCCCTGTCATTAGCACTAACGGTGCCACAGATGACAGCAAAACCAACCTGATTGTCAACTACCTGCCTCAGAACATGACCCAGGAGGAGTTCAAGAGCCTGTTCGGCAGTATCGGCGAAATCGAGTCCTGCAAATTAGTCAGAGACAAGATCACAGGCCAGAGTTTGGGCTATGGCTTCGTAAACTACGTGGATCCCAATGATGCCGACAAGGCCATCAACACGCTCAACGGTCTCAAACTGCAGACCAAAACGATTAAAGTAAGAGAACCGTCCTCACCAAGCCCAAGCTCCTCAATCACAGAAGTAGGGAATGAGGCAGAGCCCAAGACAGACGTGGCAGCAGGAGGGGAGGAGAAAGGGAGGGGCAGGGGGAGGAATCGTGGCGGGGACAAAAGGACCAAAAGAAAAGAGAAAGTGGAGTGCATTCATCCAGCTTCGCCGCTGTTCTCTGACATTCAACGTTCGTGTGCCCACTGCCCTCAAATCCTTAAGCTGGGCAAATGTCATATTTTCCATGTCAATACGGCATTGTTAGAAAGTCTTTGCTGTAAACTCACCCACTCACTGCACAATTACACCCCTACCTCAACAATACCGCTGCTTAGTCATACTGGCCTGCAAGACTCAAGTACGCATATGGTGGAAAAAACACATCATTCTGCCAAGGTGTCCTACGCCAGACCCAGCTCAGCTTCCATACGGGATGCCAACCTGTACGTGAGCGGGCTGCCCAAAACCATGAGTCAGAAAGACATGGAGCAGTTGTTTTCCCAGTATGGAAGGATCATCACCTCACGCATCCTGGTAGACCAGGTCACAGGTATATCGCGCGGAGTAGGATTCATTCGGTTCGACAAGCGAAATGAGGCAGAGGAGGCCATCAAAGGCCTGAACGGTCAAAAGCCGCTGGGTGCCGCCGAGCCCATCACCGTGAAGTTTGCCAACAACCCCAGTCAGAAGACGGGACAGGCCCTGCTTACCCAGCTTTACCAGACAGCTGCTCGCCGCTACACCGGCCCTCTGCACCACCAGACTCAGCGCTTCAGACTCGACAATTTACTAAACGCCAGCTACGGAGTTAAGAGATTCTCCCCAATAACCATTGACAGCATGACCAGTCTAGCCGGCGTCAACCTGACCGGGCCCACTGGAGCTGGCTGGTGCATCTTCGTCTACAACCTGTCCCCGGAAGCTGACGAAAGCGTCCTGTGGCAGCTCTTCGGGCCGTTCGGCGCCGTCACAAACGTCAAGGTCATCCGTGACTTCACCACCAACAAATGTAAGGGCTTTGGCTTTGTCACCATGACCAACTACGACGAGGCAGCCATGGCTATCGCCAGCCTGAACGGCTACCGCTTGGGCGACCGTGTCCTGCAGGTCTCCTTCAAGACCAGCAAGCAGCACAAGGCTTGAAGGAAGGCCTAGTCACTACTGCTCTTTAACATGCAGGGGGAGCTACTGAGCTCCCTGTACATTCACTCTACATGGGCCTGGACTGAGTCTCTCTCTAACACACATTTGACACACACATACACACACACGTTTAGTTGTTTCGAACAAAAATACACAAGTAGAGTCGTTTTTCTTTTCTCTTAACACAACATGCTAGTCCTTCCCAATGTTTGCCTGTATTGAATTAGCAGAGGTGCGAGGCAAGGCTGGGGAAATCCAAGAGGAGGGACAGTCTAATGAATGTGACAGAGAATGTCTGCAGAGATTTAATTGAATTCAGGCAAAGTAAGAACTGGTCAACAGAAGAAAAAAAAAAAAAAGTAAATCAAATATGTGCAATTTACCCAAACTATTGCCCCGGTAACTCTCCTGTCTGGCTTCAGAGGATGTAGTCACTTTTTTACACTTGGGCATTTTGAATCAGTGATTTTTTTAGAGAAAAATGATTAAA

Function

symbol description
elavl3 Predicted to enable RNA binding activity. Acts upstream of or within regulation of neurogenesis. Predicted to be located in viral nucleocapsid. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including nervous system; neural plate; neural tube; neuronal stem cell; and presumptive structure. Orthologous to human ELAVL3 (ELAV like RNA binding protein 3).

GO:

id name namespace
GO:0050767 regulation of neurogenesis biological_process

KEGG:

id description
K13208 ELAVL2_3_4; ELAV like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_00122344_00130639.mRNA True 2127 mRNA 0.50 9 121854 130707

Neighbor

gene id symbol gene type direction distance location
CI01000113_00077172_00080517 NA coding downstream 41337 75223 ~ 80517 (-)
CI01000113_00254945_00255661 HBAA1 coding upstream 124151 254858 ~ 255709 (-)
CI01000113_00268929_00271262 NA coding upstream 138141 268848 ~ 271294 (-)
CI01000113_00283931_00284691 NA coding upstream 153155 283862 ~ 284723 (-)
CI01000113_00301490_00302258 NA coding upstream 170701 301408 ~ 302281 (-)
CI01000113_00308045_00308457 HBBE2, HBBE1.1 coding upstream 177197 307904 ~ 308514 (-)
G332231 NA non-coding downstream 38011 83542 ~ 83843 (-)
G332230 NA non-coding downstream 38393 82937 ~ 83461 (-)
G332229 NA non-coding downstream 39738 81900 ~ 82116 (-)
G332227 NA non-coding downstream 43005 78459 ~ 78849 (-)
G332264 NA non-coding upstream 78874 209581 ~ 210858 (-)
G332283 NA non-coding upstream 106343 237050 ~ 239053 (-)
G332173 NA non-coding upstream 109683 240390 ~ 294222 (-)
G332284 NA non-coding upstream 111874 242581 ~ 295514 (-)
G332152 NA non-coding upstream 126117 256824 ~ 327004 (-)
G332210 NA other downstream 72369 47990 ~ 49485 (-)
G332160 NA other upstream 259520 390227 ~ 446837 (-)
G332649 NA other upstream 2016507 2147214 ~ 2148558 (-)
G332837 NA other upstream 2120138 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 2236909 2356565 ~ 2370009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008489 elavl3,LOC102780136 coding CM030126.1 CM030126.1 2616463 ~ 2630199 (+)