XLOC_011253 (CU462878.3)


Basic Information

Item Value
gene id XLOC_011253
gene name CU462878.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 8542203 ~ 8545189 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022454
GTGACagatttaacatttttgtattataatttgCAAGAATTCACAATACATGCTTTCAGAATGCTGTGTAACTACAACATGTCATGCAATGTACTCAAgaattgattatttattcatgaatAATTCAGATAGACATAGAATTAAAAACTGTAGTATAGGGATTAGAGATATTTCTGACCACTCCGGGGTATATCTAACCTTATATTTAGATAACCAGCAAAAAGAGACACTCTGGAGACTTAACACAGCAATTTTGAATGATAAAACTATACAGAAACAAATTCAGACTGAGTTTGATCTATATATCCAAAGCAATGACAATGGAGAAGTGTCTCCGAGTACCTTATGGGATGCTGCGAAGGCAGTAATTCGTGGTAAAATTATTTCCCTCACTGCTTATCGtaaaagagaaaaacagaaaaaattattaaacctccaaaaggaaataaaaaatctggaaacaaaacatattaaacaaaaagaCCCACAAATATtgataagattaaataaaattaaacaagacctaaataaaatatatgatgaAGAAATAGAAAAACAATGTAAATTCGCTAAACAAAGATATTATGAGATAGGACCTAAAGCAATGAAATTATTATCCTGGAGGATACGAAAACAACAGTCTAAAAACACAATCTATAAAATAAGGAATCCTAAAACTCAAAAGGTGTGTACTGAGTTAAAAGACATTCAGAAATCTTTTGAACTATATTACAAAGACTTATACACCCAACCAACTAGAGCAGAAACTGGGATTATAAAGAGTTTTTTGGATTCACTAGACCTACCGTCAATAGGGGAACAACAGAATAAAGCATTGTTAACTGAAATAACTATAGAAGAATTGGATAGTGCTATATCAAAACTGAAAGCAAATAAAACACCAGGAACTGATGGATATCCATCAGAGATGTATAAAACATTCAAACCTCAAATAACACCCATGCTCCTCAAATGCTTTAATTATGTACTAAGAGGTGGAGAAATTCCACAATCTTGGCAGGAAGCTGTGATTTCAATTATTCCAAAGCAGGGAAAGGATAAGAATGAATGTAGCTCATACAGACCAATTTCTGTCTTAAATGTGGACTACAAGCTATTTGCTTCTATATTATCTAAGAGACTGGAGGTTGTCATTTCTGAATTAGTAGATTTAGACCAAACTGGTTTTATACAAAACAGACAGACGCAGGATAACTTAAGGAGAACATTACAAATAATGAGTCATATTACAACAGAAAATATAAGTGCAATGTTGTTAAGCCTAGATGCTGAAAAAGCATTTGATTCTGTTGGATGGGATTACTTGTATCAGGTTCTGGCAAGATTTGGCTTTAACAATAAATTTATTGAATGCATTAAAGGGCTATATCTATCaccaaaagctaaaataaaaattaatggcCATCTGTCCAAAACTATTTACTTGGAAAGAGGGACACGCCAGGGCTGCCCTTTAAGTCCTACTTTATTTGCATTGTTTATCGAACCCCTGGCCCAAGCAATAAGAGAAGAGCCAGAAATAAAAGGGATCGTAATTAAAAAAGAGGAACATAAGATCTGTATGTATGCAGACGATGTTCTCCTGTTTTTGGCAAATCCTAAATCTAGTATTCCTAAATTAATGTCCCTCCTAAACACAATTAACTTCTATTCTGGATATAAGATAAATATTCAAAAAACGCAAACTCTTACTTACAATTTTAGACcaaatttagaaatgaaaaaacaatataattttaaatggaaTTCTATTTCACTAAAATATTTGGGAATAAACTTAACAAAAGACTTGTCAACACTTTTTGACAGTAACTACGGCCCCATTTATAAAGAgataaaatctgatattgcaaaatGGACTCTCCTACCATTAGACATGAGCAGCCGGATAGAAGCAATTAAAATGAACGTGGTTCCACGGTTACTTTATCTTTTTCAATCAATGCCTCTGGAAATACCCCAAAAACAATTTAATGAATGGGATAGGATGATCTCAAGGTTTATCTGGAATAGTAGAAGACCTAGGATAAAGTTCAAGACACTGCAATTGAGAAAAGAAAATGGTGGAAGAGCCCTTCCATGTCTTCAGGACTATTTTTTTGCTGCACAATTAAAACCTTTACTATGTTGGTGTATACAAAGCTATGAGTCTAAATGGAAAACACTAGAAACTACACAAATAGATCAACCTTTACAATCCTTACTTggtaataaaaatcaagcagaaaAGTACTACAGTAGATTGAGTACTTGGACCGTGTTTTCTTTGAAGTTATGGTTTAGAATACTGAAGAAATTACAATTAGAAAAGCATAATGGGATATTAAGTTGGATAGCATTCGACCCGGACTTTCAACCGTGTACACTAGATAAGAGATTTAAACAGTGGGTTTGGAGAGGAATCACATCATTCAGTTCGGTGACCTCTAATGGACACTTTATGAGTTATCAGACCTTATCAGATACATTTGGCCTGGACAAGCAGGACTTTTACAGATACTTGCAAGTTAGagattactttaataaaaaaattaaaaataaaattaaggatGATTCTAATTTGATCACAGTATTTGCGGACGCATACATAAAAGAAGAAAACAGAATGCTGTGTAACTTTCAAGCAACCTGGTTTTGTGCGGCGGATATAAAGAGACATTGATTGAGTGCTTATAAATGAGGACACAAAACAAGAAGTGAATCGTCCATGCGAGTGACACGGCAACACGCTGGCCGCTCTGAACGGCTGAATAAATTGTGGCGTGCGGGGGCACAGGGAGAAGAAAACACACCCCGTCTCTCCTAGAACAACAACAAAGATAAACTCCTTCTGCAGTCACCAATTGGCTCTGGACGGCCCTTCACTTTCACACAGGCGTGAAAGACTCGAGGACCTTGAATGGGAAAATTGGCCAAACGAAGAGTTATTTCCTTCATCTGAGATGTGGAAGAAAAACAGACGACAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022454 True 2987 mRNA 0.35 1 8542203 8545189

Neighbor

gene id symbol gene type direction distance location
XLOC_011251 cdc42bpaa coding upstream 64888 8323348 ~ 8477315 (+)
XLOC_011252 FO818681.1 coding upstream 69986 8472101 ~ 8472217 (+)
XLOC_011250 NA coding upstream 226746 8308590 ~ 8315457 (+)
XLOC_011248 si:ch211-236p5.3 coding upstream 236411 8291561 ~ 8305792 (+)
XLOC_011249 BX248131.2 coding upstream 241699 8300390 ~ 8300504 (+)
XLOC_011254 edrf1 coding downstream 208831 8754020 ~ 8796333 (+)
XLOC_011255 tonsl coding downstream 254262 8799451 ~ 8855305 (+)
XLOC_011256 psmc1a coding downstream 353827 8899016 ~ 8941421 (+)
XLOC_011257 akap6 coding downstream 443185 8988374 ~ 9267175 (+)
XLOC_011258 NPAS3 coding downstream 763236 9308425 ~ 9894157 (+)
XLOC_011246 NA non-coding upstream 312320 8225655 ~ 8229883 (+)
XLOC_011242 BX927406.1 non-coding upstream 451729 8090357 ~ 8090474 (+)
XLOC_011259 NA non-coding downstream 1371574 9916763 ~ 9942723 (+)
XLOC_011269 NA non-coding downstream 2226664 10771853 ~ 10775305 (+)
XLOC_011272 FP102895.1 non-coding downstream 2829585 11374774 ~ 11374896 (+)
XLOC_011273 NA non-coding downstream 2832803 11377992 ~ 11379853 (+)
XLOC_011274 CU076099.4 non-coding downstream 2856758 11401947 ~ 11401960 (+)

Expression


Co-expression Network