CI01000113_01321501_01326215


Basic Information

Item Value
gene id CI01000113_01321501_01326215
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1321356 ~ 1326350 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_01321501_01326215.mRNA
GTACAAAAATAGCTCGGTGACAGTTGTTTCCACACAGTCACATGGGGTGTATTTTAAAAGGTGAACCAAAGACGAGGGACATTTGTTACACCGATACTGTGTTTCGATATATCTCTCTGCTTATTAAAATTAGGCGACTATAATCATGAGCAATTCTCTGATGCACTTGCTTTTATTACCAACACGGCTAAGTTTATGGATTCTCTCTTTGGTATATTACATTCTTGTGTATGGAACAGCTTGGATCACTGCTTGTTTGGTTTTGATCCGAATTGCCTGGACTGGATTTAGGGATCCATACAGAACTTTTCAATGGACCATCCGAAAGAAACCCCCAGACTGCCTCCAAGACCCTGCACTTGGCCACCATGCATATCTGAAGGGCAGGAGCTCAGGCTTGAGGTTCCATTATGTAACTAAAGGAGACCACAGAAAGCCCCTAATGCTGTTTCTTCATGGATTCCCAGAGAACTGGTACTCTTGGCGTTACCAATTACATGAATTCAGTCGTCATTACCACACGGTGGCGCTAGATCTGCGTGGCTGTGGAGATTCAGATGCACCCGTCCAGCTGGAGGAATACTCACTGCAGACACTCTTATATGACATCAGAGACACCATCGATGAATTGGGTCACACGAGTTGTATATTGGTGGGCCATGACTGGGGTGGGATGCTGGCATGGCATTTTGCACTGGAGCGGCCAGACATGGTGCAACTTCTCATCGTCATGAATGCCCCTCATCCTGCCTCATGGCTGGGTAAGAGTGAGTTTTTCTTCTGTGACCTGCCAGACAGTAACACTCTGTACAAGCATCAGGATGTTGGTGTGCCCTGCATGTTAATTTGGGGTGAGGCAGACAATATACTAGTGGAGGGCATGTCCGGTGGGACAAGGCCTTATGTAAGAGGTCCAGTCGTCATTCACACTATTCCCGAATGCAGCCACTGGGTTCAGCAGGATCAACCTGAGATAGTCAACAAACTCATATGGGACTTTGTTCTGGATGAAGACATCATAAAACACAATCATTGATTGCCTCTGGTTCATTTGGCGTAATGAAGATTTTTTTTTTAGATACTGGCTCCAGCAAGGTTTTGGATTTTCACTGAAAAAATAACTACTTGCCTTTAGTCTGATTTGTCTTATGTTAATTAAAAACAAGCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_01321501_01326215.mRNA True 1171 mRNA 0.44 5 1321356 1326350

Neighbor

gene id symbol gene type direction distance location
CI01000113_01292096_01298082 NA coding upstream 21437 1291953 ~ 1299919 (+)
CI01000113_01127641_01134250 NA coding upstream 186875 1127641 ~ 1134481 (+)
CI01000113_01120464_01124821 NA coding upstream 196325 1120398 ~ 1125031 (+)
CI01000113_01110162_01112498 NA coding upstream 208854 1110162 ~ 1112502 (+)
CI01000113_01072283_01091398 NOTCH3 coding upstream 229626 1071905 ~ 1091730 (+)
CI01000113_01329811_01334714 LPAR2A coding downstream 2533 1328883 ~ 1334735 (+)
CI01000113_01376249_01385209 NA coding downstream 47717 1374067 ~ 1385402 (+)
CI01000113_01424978_01425704 NA coding downstream 98628 1424968 ~ 1425835 (+)
CI01000113_01507537_01509522 NA coding downstream 181187 1507537 ~ 1509522 (+)
CI01000113_01510550_01513751 NA coding downstream 184200 1510550 ~ 1514206 (+)
G331661 NA non-coding upstream 42556 1276338 ~ 1278800 (+)
G331583 NA non-coding upstream 63498 1257188 ~ 1257858 (+)
G331590 NA non-coding upstream 69544 1249680 ~ 1251812 (+)
G331619 NA non-coding upstream 86226 1229103 ~ 1235130 (+)
G331652 NA non-coding upstream 115094 1205979 ~ 1206262 (+)
G331692 NA non-coding downstream 39468 1365818 ~ 1367922 (+)
G331702 NA non-coding downstream 62962 1389312 ~ 1389551 (+)
G331611 NA non-coding downstream 66895 1393245 ~ 1399662 (+)
G331709 NA non-coding downstream 162211 1488561 ~ 1491072 (+)
G331732 NA non-coding downstream 217497 1543847 ~ 1544077 (+)
G331615 NA other upstream 74783 1246291 ~ 1246573 (+)
G331487 NA other upstream 399223 917735 ~ 922133 (+)
G331470 NA other upstream 404819 913392 ~ 916537 (+)
G331260 NA other upstream 986735 334158 ~ 334621 (+)
G331767 NA other downstream 336435 1662785 ~ 1663255 (+)
G331759 NA other downstream 341652 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 1017071 2342987 ~ 2346006 (+)
CI01000113_02548934_02576888 TBL3 other downstream 1242417 2548934 ~ 2577790 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026795 AL954361.1 coding NC_007114.7 CM002887.2 53097587 ~ 53114299 (-)