CI01000113_01569971_01571224 (PTGER1C)


Basic Information

Item Value
gene id CI01000113_01569971_01571224
gene name PTGER1C
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1569308 ~ 1571802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_01569971_01571224.mRNA
AACTCGGTTGTACGTACAGTATGGTAGTTTTTATAAACACTATAAACACTAAGCTCTTCTCTAGTGTTTTTTATAGTTAACGAACTGTGAAAACTGGATAACTTTCCTCAGGTAAATGCAACGTTAGAAAAAAAGCTGTTTTATTGATGTCTTTCCGTGGTTGAAACAGTGATTGAGCGATGACACAAGACATTATTTCCAAATAACAGTTAACAATTTTCAATGTCATATTTGCATTAAAAATTATTCAGTTCTATAATTATTAAATTATAATTCAATTGTTATGCAAAGGGTATTGTTCAGTTGTGTCTTCCTGTCAGCAACATTTGGACGGTTTGGACACAATATTATTTTCTGCGCCAGCATTATTTTGCTATCCAAGGAGTTTTCCTCAAGCATGATTACAGTCTTGAATTTTAATGTAGACTTCAGCAGTGAATATATAATCTGAATTGCTCTCTCTGAATGATTCTACTTACAGCAATAATAGATGAATCCGTTCTAGAAGCATCCTGGAAAGAAAGGTTCATCACAGACACTCATCTTTAAGGATTTCCTGACTGTCCTTCAGTCACACCATGGATATTCTTTTCACCTCTTCCTTCCCCGTTTTATGCCAGCACTCTAGAGATTATAATCTCACAACTCTCTGTCCTGACAACCAAAAGGTAAACTCAACGCCTCCTGCTCTGGTTAACCCACCAGCGTTTGGGATGTCCTACTTCACCATGACCCTCGGTGCCCTTTCAAACCTAATTGCACTAGCAATCCTAGCCCATTCTTATGCCCGCTTACGCCGACGGGCCAAAGCGCCGTTCCTACTGCTGGCTTCAGCCCTGCTTCTGAGTGACCTGGCAGGCCACCTGATCACAGGGGCTTTGGCACTTCACCTCCATCTTGAAAGAGTGAAGCATCACGGGGCGGCAGTAGCAGTGGCGCCTCCTCAGGTTTACTGCAAGTTATTTGGAGCTTGCATGGTGTTTTTTGGGCTTTGCCCTCTGCTGCTGGGCAGTGCGATGGCAGTGGAGCGCTGCATAGGCATCACGCAACCTCTCCTGCACCCGGCGGTTGTCACCATGACACGCGTCCGCCTCACCATGCTCCTGATTGCCTCCACAGCTCTCACTTTGGCGGGACTCCCTCTGCTGAACGTGGGGGACTACAAACCACAGTTTCCTGGCACCTGGTGTTTCTTACCTGTGAACGGTCCGCTTTCCATCGCTGACGCCAGCCTTGCTTTGGCTTTTTCCATACTGGGGCTTGTAACATTGAGCGTCTCAGTTGTGTCTAATACTATAAGTGGGCTGAAATTGCTCCAGGCAAGGTTTAAGGACCGATGTGTCAAGTCAAACGCTGCTCGGAGACATGGATTCCTCTCATCTTCTTCTCTGCATTCCCTGGATGTGGAAATGATGACTCAGCTGGCCGTGATAACGGTGGTCTCCTGCGTCTGTTGGAGTCCATTTCTTATTTACATCCTCATATCCATTGGCAGGTTTTATAAAGGAATCAGCAGACCGGTGCGTCAGTGTGAGAAGCTGCTTCTCTTGGCTCTGCGCTTGGCTAGCTGGAACCAGATTCTGGATCCATGGGTTTACATCCTCCTGCGGCGAGCGGTTCTGCGCAGAGTCCTTCAGCTGCTGCAGCCCGACAGAGTCGTGTTTACACAGAGCAGCTCCTACAGAGACTCACACAGAAAGCAAATTAGTTCACACTGATTACCCATTTGTTTACACTAACTTCGAATATGTTTACTTTGGGTCATTCACCAAAAATATATGAAATCAAATATTTATAAAGAAATTGTGTGAGAATTTTTTCCAAGTGAAAAAGAAGTGCAAGTGTACATGGTATACTTCAATATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTACTTGCAGATAACATAATATTAATCAAATAAAAGGCCACTTTAATTGTACTGAAAGAAAGTACACTTTAATGACTATATTTCCAAAAGCTGCAGTCCGTAACTTTTTTTGGTTAATGATCCAAAATAAATTTTTGAGCAAGTACATAACCAGCCAGTGTTCAAAACTATCTCCTTACCTTAGCCCGATTCACAGCGGTAAGCTTGTAATATTGTTTTCTAATTCGGGTGATACTGGTAGGTTTCCGCACACTTCCAAGATGTAGAATCTGTGATTCTGAAGTACAGTATCCACATCGGTGTGGTGACTGACAGCAAACATTCGATTCATCCGCGCTGAGGAGCCGTGCCGAGGCACAACCCACATAAAGATGATAATTCCGCAAATAACTGCAACTGCAGGTTTCAAACAGAGATCACAAAACGTATGGACTGCAGCTTTAACACAATTAAA
>TU378126
TATTAATCAAATAAAAGGCCACTTTAATTGTACTGAAAGAAAGTACACTTTAATGACTATATTTCCAAAAGCTGCAGTCCGTAACTTTTTTTGGTTAATGATCCAAAATAAATTTTTGAGCAAGTACATAACCAGCCAGTGTTCAAAACTATCTCCTTACCTTAGCCCGATTCACAGCGGTAAGCTTGTAATATTGTTTTCTAATTCGGGTGATACTGGTAGGTTTCCGCACACTTCCAAGATGTAGAATCTGTGATTCTGAAGTACAGTATCCACATCGGTGTGGTGACTGACAGCAAACATTCGATTCATCCGCGCTGAGGAGCCGTGCCGAGGCACAACCCACATAAAGATGATAATTCCGCAAATAACTGCAACTGCAGGTTTCAAACAGAGATCACAAAACGTATGGACTGCAGCTTTAACACAATTAAATATGCGCTAAAAAGTCAAATACATAAGCCC

Function

symbol description
ptger1c Enables prostaglandin F receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Orthologous to human PTGER1 (prostaglandin E receptor 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04258 PTGER1; prostaglandin E receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_01569971_01571224.mRNA False 2351 mRNA 0.43 2 1569338 1571802
TU378126 True 465 lncRNA 0.39 1 1569308 1569772

Neighbor

gene id symbol gene type direction distance location
CI01000113_01554726_01565897 SLC27A1A, SLC27A1 coding downstream 3441 1554144 ~ 1565897 (-)
CI01000113_01502427_01506373 NA coding downstream 62965 1502161 ~ 1506373 (-)
CI01000113_01480199_01500090 COLGALT1 coding downstream 69067 1479477 ~ 1500271 (-)
CI01000113_01458405_01476967 GMIP coding downstream 92371 1458405 ~ 1476967 (-)
CI01000113_01432095_01456239 LMX1AL coding downstream 113099 1431986 ~ 1456239 (-)
CI01000113_01589305_01600983 NA coding upstream 17352 1589154 ~ 1601012 (-)
CI01000113_01652528_01653349 NA coding upstream 80584 1652386 ~ 1653446 (-)
CI01000113_01846674_01851715 BTBD17B coding upstream 274566 1846368 ~ 1851790 (-)
CI01000113_01854931_01857730 NA coding upstream 282964 1854766 ~ 1858875 (-)
CI01000113_01871256_01883265 PDGFAB coding upstream 298588 1870390 ~ 1884400 (-)
G332601 NA non-coding downstream 21803 1547128 ~ 1547535 (-)
G332600 NA non-coding downstream 22574 1546417 ~ 1546764 (-)
G332599 NA non-coding downstream 23115 1546003 ~ 1546223 (-)
G332598 NA non-coding downstream 23754 1545366 ~ 1545584 (-)
G332597 NA non-coding downstream 24919 1544190 ~ 1544419 (-)
G332611 NA non-coding upstream 14224 1586026 ~ 1586275 (-)
G332621 NA non-coding upstream 73198 1645000 ~ 1645350 (-)
G332622 NA non-coding upstream 86923 1658725 ~ 1658938 (-)
G332623 NA non-coding upstream 90954 1662756 ~ 1662984 (-)
G332624 NA non-coding upstream 91223 1663025 ~ 1663256 (-)
G332160 NA other downstream 1122501 390227 ~ 446837 (-)
G332210 NA other downstream 1519853 47990 ~ 49485 (-)
G332649 NA other upstream 575412 2147214 ~ 2148558 (-)
G332837 NA other upstream 679043 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 795814 2356565 ~ 2370009 (-)

Expression


Co-expression Network