CI01000113_02159290_02165087 (SLC25A19)


Basic Information

Item Value
gene id CI01000113_02159290_02165087
gene name SLC25A19
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2158710 ~ 2165087 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02159290_02165087.mRNA
ATGGTGGGATATGATCCTAACGCCCCCAGTTCGGCTCTTACCCCGGAGGAAGCTGCCCTGGCCGGGTCAGCGGCAGGCATGGTCACCCGTGCCCTCATCAGTCCTCTGGATGTCATCAAAATCAGGTTTCAGTTGCAGATCGAGCAGGTGTCCTGGAGGAATCAGCAGGGGAAGTACTGGGGTTTATGGCAGGCCACACGCTGCATTCTGACCGAGGAAGGACTTCCTGCTTTCTGGAAAGGACACATTCCTGCCCAGCTGCTGTCTGTGTGTTATGGGGCAGTTCAGTTTGCGAGTTTCGAGGCCTTGACAGAGCTGGTCCATAAGAAAACCCCCTATAACAGCCAGACCCCAGGAGTTCATTTCTTCTGTGGCGGTTTAGCCGCCTGCTCCGCCACTGTTGCCTGCCAGCCGCTGGATACCCTCCGCACACGCTTCGCTGCCCAGGGCGAACCCAAGGTGTATCGTAACCTCAGACATGCGGTCGGCACAATGTTTCGCTCTGAGGGGCCCTTCACCTTCTACAGGGGCCTCACACCCACGCTTGTGGCGGTGTTTCCTTACGCAGGCCTGCAGTTTTTCTTTTATAATATCCTGAGGAAACTTCTGGCGCACCAGGACGCCAAATCTAAAGGAGGTTTACACAGTCTCATCAGTGGCAGTTGCGCTGGAGTCATCAGTAAAACTCTCACATATCCTTTCGACCTGATTAAAAAGAGACTTCAAGTGGGTGGATTTGAAGTGGCCAGGATGCAGTTTGGACAGGTGCGGACATATCATGGGTTTGTAGACTGTGTGATGAGGATCGGCAGAGAGGAAGGTCTACGGGGTTACTTTAAGGGACTCTCTCCTAGTCTCCTGAAGGCCGCTTTCTCCACAGGCTTCACCTTCTTCTGGTACGAGTTCTTCATCAATGCCATTGTGAGCCTCAAGAGCAATGTATTAGGATGTGCAGTGAAGATGAACCAGGAGCTGCTCTCAGAATTACAGGCACCGAGTCAGGAGCTGTTTTATCACACTAGAAAGATATTTTTACCTCTGACTTGCTCCACTAAAGCCTAAACCGAACAATCAGCTTAAATGTTCTCCATTTACACGTAATGGTGAGCTCTACCTCTTGTCTCTCTCGACTGGAGACTAGAAAACCATTGTTAATAATTTGTAATAATGTCTGTGTATTTTGTTTGCACTCTGCATGAGGGTCTATTTTATTGTTTGTTTTTTTTAAACATAACACTGGAAATCAGAATGTTTTAACTTATAGTTTTTACTGTTTTGCATTTAAAAACCACATACCAAGAATGGTGCATAAAATATTAAATAGTCTGGTTACAAATAGTTTTATTTCATGTGTTTTATGTCATTAAGGTTTTCAAATGGTGAATGGTCAAAATATTTTATGGATGAATTTGAAGAAAAATGGTTCCATTCAGATTTTATGTACCATATTAAGATCGTTTGGAAGAGTTTGAATCTCCATGTTTCCTGTTACTCTGGCTTTATTTATGCCCATATATCTTTTTATTGCACTTCCTTTCTGACAATAGTAAAACCAACTCATGTAAGGTTCATATTAGTGGTTGTGCTTGACATCTGTGTACTCCTGTGTAAAACACATATTTGTCATATTAGGGCAAATAAA

Function

symbol description
slc25a19 Predicted to enable thiamine transmembrane transporter activity. Predicted to be involved in thiamine pyrophosphate transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in inherited metabolic disorder and microcephaly. Orthologous to human SLC25A19 (solute carrier family 25 member 19).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K15108 SLC25A19, DNC, TPC1; solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02159290_02165087.mRNA True 1642 mRNA 0.45 7 2158710 2165087

Neighbor

gene id symbol gene type direction distance location
CI01000113_02136165_02143106 NA coding downstream 15604 2135324 ~ 2143106 (-)
CI01000113_02127709_02131244 DHYS, DHPS coding downstream 27466 2127209 ~ 2131244 (-)
CI01000113_02007178_02015572 NA coding downstream 142875 2007178 ~ 2015835 (-)
CI01000113_01917876_01982420 PRKAR1B coding downstream 176290 1917286 ~ 1982420 (-)
CI01000113_01908893_01913809 NA coding downstream 244482 1908739 ~ 1914228 (-)
CI01000113_02170894_02179511 AMDHD2 coding upstream 5674 2170761 ~ 2181419 (-)
CI01000113_02193825_02200601 TUBB4A, TUFM coding upstream 28268 2193355 ~ 2201275 (-)
CI01000113_02334123_02335356 NA coding upstream 168424 2333511 ~ 2335356 (-)
CI01000113_02348726_02354574 GCDHB, GCDH.L, GCDHA, GCDH coding upstream 183519 2348606 ~ 2354574 (-)
CI01000113_02356565_02370009 NA coding upstream 191478 2356565 ~ 2370009 (-)
G332656 NA non-coding downstream 349 2156517 ~ 2158361 (-)
G332821 NA non-coding downstream 12210 2146202 ~ 2146500 (-)
G332820 NA non-coding downstream 12969 2144904 ~ 2145741 (-)
G332638 NA non-coding downstream 39564 2118370 ~ 2119146 (-)
G332650 NA non-coding downstream 40460 2117936 ~ 2118250 (-)
G332866 NA non-coding upstream 124561 2289648 ~ 2290022 (-)
G332871 NA non-coding upstream 133382 2298469 ~ 2298893 (-)
G332872 NA non-coding upstream 139179 2304266 ~ 2330958 (-)
G332894 NA non-coding upstream 248622 2413709 ~ 2419211 (-)
G332898 NA non-coding upstream 263771 2428858 ~ 2455150 (-)
G332649 NA other downstream 10152 2147214 ~ 2148558 (-)
G332160 NA other downstream 1711873 390227 ~ 446837 (-)
G332210 NA other downstream 2109225 47990 ~ 49485 (-)
G332837 NA other upstream 85758 2250845 ~ 2251213 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026187 slc25a19 coding NC_007114.7 CM002887.2 13487760 ~ 13509283 (-)