CI01000113_02170894_02179511 (AMDHD2)


Basic Information

Item Value
gene id CI01000113_02170894_02179511
gene name AMDHD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2170761 ~ 2181419 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02170894_02179511.mRNA
AGCGATTGTGATGCTCGGCCTTCAAGTTGACACTTTGTCACACATTGAATGAATGACGCATTTTATCACTTTAAATTAATCAATTAGCTCACTGCTCAACCTCTGACCTATAACGAGCACTGAGTTTATGCCTTAAGGATCTACGTCAGTGACACCCCCTTAAAACATCCACACACACACAATAAACACATGCACAAACACACACCTCACCCACGCTTTTTAATAAATCTAATCATCAGGTCAAGCATGCCAGGCCAGCCTTCAGTGAGGTGATGCTTGATCTCCTAGACAGACGAAAACAACACACACATGCATAAATATTATGAATACAAATATACATGCAAAAGCCCTTAAACAGTACTGAGAGAGATCATATTAACATGCTGACTTCTAAGGATTTTAACATATTATGATCATCCCGTCACTCTTAAAATTAAATTGATTTTAATAGATGATAGTCATTTAGGATTTGATTTAGGACATGCTTTAAAGAGAAGTGTGTGTTTAAAATAAATAAAATTCAAAATTCATAAACTGATGGCTGTTCCTGATTGAATTAGCCTACTTATTACAAAAAATATATTTGTTGTTTTTAATATGTTCTACAAACTATTGTCTTGTGTCTTCTAAAACATACAGTATTGTCTTTTTAATATTGCTATTTTTTCCTGTTTATTTATTGGTTTTATTAATATAATGGACAGGTTTAGCTCTGAGTTTTAGCCGGACTGTTTAATAAATTTAATAATCATTAACAGTATGACAAAATATGTAATATAATAGTAATATAAATTTAATAAATATATGAACACAATTGTAGTATTTTTAATTAAGCAATTGATAATATTGTTTATGAAATATATAGTACTGTATGTTTTTATAATTATAATAATATAATTTCTTTTTTACATTTTAATATTGTTGTTCTCCTTTTTTCCTCTTAATTTCAACACTTCACTAGTTTTTCCACTCTTTTTTCCTCTCAATTTTAATCCTTAGTTAATTTTCCAATCTTTTTTCTTTTGTTACTTTCCCCCTCTTTATTTTTCCTCTTAATTTTAACCCTTGATTAATTTTTCCACTCTTTAATTTTAACCCTTGGTTAATTTTTCCACTCTTTTTACTTTATCCTCTTAATTTTAACCCTTGGTTAATTTTTCCACTCTTTTTACTTTATCCTCTTAATTTTAACCCTTAGTTTTAATCCTTGTTTAATTTTAACCCTCTTTTCCCCTCTTATTTTAATCCTTGGTTAATTTCCCCCCTCTCTTTTCCTCTTAATTTTAACCCTTGGTTAATTTGTCTCCCCTTTTTACTGTTTTCCTCTTAATTTTAACCCTTGGTTAATTTTAACTCTCTTTTTAATTTTTTCCTCTTATTTTTAACTCTCTTTTTTTAATTGCCCCCTCTTTTTTCCTTTTAATTTTAACCCTTGGTTAATTTTAACTCTCTTTCTTCTTTTTCCCTCTTAATTCCCTTAGTTGATTTCCCCCCTGTTTTGACTTTTTTTTTTTTCCTCTTAATTTTAACCCTTGGTTAATTTTAACACTCTTTTTTTCCCTCTTAATTTTAACCCTTGGTTAATTTGTTATAATTAACTCTTTTGTTATAATTACATTCGCAAACAAAGTTCAAAAATATTGTCGCTTTCACCAATAATGCTCATAAATTTGTTTGTTTAGGTGTTTCAAGTATCTGTATAGGACTCCCATGTGCATTAACATACATCACATCTATAATTGCCTGTTCAAAGCACTCTTAACAAACTTAAAGACAACAACATAACCTCAAAAACACTGACATGTTGATTTAGTAATGAAGAAAGTTTGTTTGTTCTGTTCTTCTTAATGTGTGATGTTGTGAATGTGAGAACCACACTGTCAGACACAGGTTAGAGGTTAGAGGGAAATGAAGGCCTGTGTTTCGCCCTACAGGGCTGTTCTCAACAGTTATGACGCAGGTGTGAGCGGTTTGTGTCCGAGGGTTGTTTTTAAGTGTAAGGGTGGGATTTCGGGAGAGATGCCGTCCAATAAGAGTGTCTCAGATGCCCCGATCACACAGCTTGTGAACTGTAGGATCCTGAAGGACCACAGGCTGCAATGGGAGGACTTGTGGGTTCGCGAGGGCAAGATTTTGAACCCAGAGAGGCTGTTCTTCGATGAGGAGGGTTTTGCGGACCACAAGGTTGACTGCGAGAATAAAATCATTGCACCTGGATTCATAGATGTACAGATAAATGGTGGATATGGCATTGACTTCTCCCAGGCCAGCAGTGACATCAGAGGGGGCGTGGCTGTGGTGGCCAAAAAGATTCTAGAACACGGTGTCACTTCCTTCTGCCCTACTCTCGTCACGTCTCCTCCAGACATATACCACAAGGTCCTTCCTGAGCTCAGAGTTCAGGATGGAGGCCCTGAAGGGGCAGGAGTTTTAGGTATTCATCTGGAGGGGCCATTCATCAGTGAAGAGAAGAGAGGCGCCCACCCTCCGAAGTTCCTCCGCACTTTTAAAGCCGGGGGCGTGGCCGACCTGATGGAGACCTATGGCCACCTGGACAATGTCGCCATGGTAACACTCGCACCAGAACTGGCCAATAGTGCGGCTGCAATCCGTGAACTGTCAGGAAGGGGCATAGCGGTATCATTGGGTCACTCGATGGCTGATCTCTCTCAGGCTGAAGAGGCTGTGCAGAATGGAGCCACATTCATTACACACTTATTCAATGCCATGTTGCCTTTTCATCACAGGGACCCGGGCATTGTGGGATTGCTTACAAGTGATCGTATCCCACCAGGTCGGAATGTTTACTACGGGTTGGTGTTGGTCACTGACGCTGTGACAGCGATGGGTCTCCCTCCGGGCCGACACACACTTGGACAGCAGCAGATCGACATCCAGGGGCTTCACGCATACGTCGCAGGCACTACAACTTTGTGTGGCAGCATTGCGACCATGGACATGTGTGTGAGACACTTCAGAGAGGTGTCAGGTTGTACTGTTGAAGCCGCATTAGAGGCTGCATCGCTGCATCCTGCTCAGATGCTGGGCGTCAGTCACAGGAAGGGAACGCTGGAGTACGGCACAGATGCAGATTTTGTAGTACTTGATGACACACTGACAGTCAGGGAAACCTACATTGCTGGACAGCAGGTCTGGAGGAAGTGACATCATCTAGAGGACCGTCTTCTGCTGGAATGGTTGGAGTTTTTTTCTGTCTTTAGACTTGGATCACCAAAAAGACTCATGAATGCAAAAAACACATAATTCTCTCTAATTTCATTTAATTTTGTTGATTAAA

Function

symbol description
amdhd2 Predicted to enable N-acetylglucosamine-6-phosphate deacetylase activity. Predicted to be involved in N-acetylglucosamine catabolic process. Predicted to act upstream of or within N-acetylglucosamine metabolic process and carbohydrate metabolic process. Is expressed in blood vessel; immature eye; neural crest; retina; and yolk syncytial layer. Orthologous to human AMDHD2 (amidohydrolase domain containing 2).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01443 nagA, AMDHD2; N-acetylglucosamine-6-phosphate deacetylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02170894_02179511.mRNA True 3298 mRNA 0.39 12 2170761 2181419

Neighbor

gene id symbol gene type direction distance location
CI01000113_02159290_02165087 SLC25A19 coding downstream 5674 2158710 ~ 2165087 (-)
CI01000113_02136165_02143106 NA coding downstream 27655 2135324 ~ 2143106 (-)
CI01000113_02127709_02131244 DHYS, DHPS coding downstream 39517 2127209 ~ 2131244 (-)
CI01000113_02007178_02015572 NA coding downstream 154926 2007178 ~ 2015835 (-)
CI01000113_01917876_01982420 PRKAR1B coding downstream 188341 1917286 ~ 1982420 (-)
CI01000113_02193825_02200601 TUBB4A, TUFM coding upstream 11936 2193355 ~ 2201275 (-)
CI01000113_02334123_02335356 NA coding upstream 152092 2333511 ~ 2335356 (-)
CI01000113_02348726_02354574 GCDHB, GCDH.L, GCDHA, GCDH coding upstream 167187 2348606 ~ 2354574 (-)
CI01000113_02356565_02370009 NA coding upstream 175146 2356565 ~ 2370009 (-)
CI01000113_02479865_02481505 NA coding upstream 297398 2478817 ~ 2483526 (-)
G332656 NA non-coding downstream 12400 2156517 ~ 2158361 (-)
G332821 NA non-coding downstream 24261 2146202 ~ 2146500 (-)
G332820 NA non-coding downstream 25020 2144904 ~ 2145741 (-)
G332638 NA non-coding downstream 51615 2118370 ~ 2119146 (-)
G332650 NA non-coding downstream 52511 2117936 ~ 2118250 (-)
G332866 NA non-coding upstream 108229 2289648 ~ 2290022 (-)
G332871 NA non-coding upstream 117050 2298469 ~ 2298893 (-)
G332872 NA non-coding upstream 122847 2304266 ~ 2330958 (-)
G332894 NA non-coding upstream 232290 2413709 ~ 2419211 (-)
G332898 NA non-coding upstream 247439 2428858 ~ 2455150 (-)
G332649 NA other downstream 22203 2147214 ~ 2148558 (-)
G332160 NA other downstream 1723924 390227 ~ 446837 (-)
G332210 NA other downstream 2121276 47990 ~ 49485 (-)
G332837 NA other upstream 69426 2250845 ~ 2251213 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026188 amdhd2 coding NC_007114.7 CM002887.2 13523773 ~ 13546610 (-)