CI01000113_02183987_02191396 (NOG5)


Basic Information

Item Value
gene id CI01000113_02183987_02191396
gene name NOG5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2183560 ~ 2191503 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02183987_02191396.mRNA
CTATTAATGCAGTTTACTTTCAGTTAGATTCAGTTTACATTTTGGCGTTCAGGAGGTCTCAGCTCACCCGTGGGAGGGTGTTGTAGTTGTAACGGGTGACACATTGATCTAAAACCCGCGGGGCGACACAAGCGTGCAGCGCAACTCATGACGCGTTTGGCGTCTCCAAAGAAAAGCTCCATTCAGCAGGAGACAGGCTTCAGTTATCAAAGAGGAGTAGCCCATTAAAAGTCTCTAACCTGTTAATTAATTACCTTCCAGCGAACTTGTGGGAAACATAGAGAGAATTTTAGCTACTGTTCTGAATTATTTGTTCTTCACAAACTTTTAGTAAGCTAGAACTGCGATCCAAAACAAATTATCATAAGTTTTAAACATCATTTCAGTAAATAGGACAATTAATGAACTTTTCTTGACTTGAATGAAAATGAAGGCGTCTCCTGCGCTCGTGCTCTGTGTGTCCGTCACCGTTCACCTCGCGCAAGCTCAGCTTCAGTTGCGCGTGCGCCCGTCGCCTAGCGACCACCTGCCGGTACCGGACCTGCACGAGGACCCTGACCCGGCGCTGGAACCGGGAGAGAGGGATTTAGTCCCTCGGTTGCTGCGGCGGAAACTCGGCAGCAGTTTTGACCCTGTCTTCTCCTCGATCGGTCCACCGACGCGAGGTAACGGGTCCGAAATCACGCGAGAGGACGAGATCAGTCTCGCCGGACCGATTCCCCGTGAATTTCAGCAACTGGATTTCTCTAGTCTTAAAGCAGCACCGAAAACGGAGCGCAGGGTGCGCCGGTGGTTGTGGTCGTACACCCAGTGCCCGGTGCTGTCGATGTGGAAAGATCTGGGCATGCGTTTCTGGCCGCGATACGTCAAAGAAGGACAGTGCTCGACCGAACGCTCGTGCTCTTTACCGGAGGGGATGTTTTGTAAACCGGTGCAGTCCGTGAGCGTCACGCTCCTCCGGTGGCACTGCCAGCAGGGCTCTCGCGCGCTCAAGCGCTGCGCGTGGATCCGCGCGCACTACCCGGTGATTTCACAGATGAATGCAACAACCAGGACCATTACTGAAGGTACAGCAGTTAACACAACTAATAACACCATCCCTGAAACCAGGACAGTCAAAAACCCCTTCTCAGCATCACGACCTGATTGGTTGCTCTACACAGTTCCTGCATCAGCATTTGTGATTGGAATTTTTCTGTTCACCTACATCTGCAAAACACAACAACGCAGGAATGGCAAGCAAACTGTGAGCGGCACTCAGAGGTGTATGGAGAGTGCTGTAAACAACAATAAGGATGAGACGCAGTCCTATGAGAATGTAGAGGCAGCTATTTACAGCAATCAAGACAAAGTCACATATTATGCGTCTGCAGATGAAGATTATCTGGACCCTGATGCAATTGGGGAACAGGAAGGGGCGGGGCCAGAGGAACATCAGAACACCCTACAACCACCTAGCAATTTGACAGACACTGATGGAGAGTCGTATGAGGACATGGAGGGATGTTTGTATGCTCAACCCCGAAAACGGACACAGAAACTTAAGGATGTGACTGAAGATGAGGACTACATCAATCCTGATGATGGAAAACAAGATCTCACTCTGGACCACACAGACACTGAGTCGTATGAACTCATGGCCGAATCAGACTGTATATACAACAACACAGACTTCACAGCATCCCATGACACCACAGAGGACGATTCATATGAACAGATGATTGGAATCCCGGCTCCGCTCCAGAAAGAGATGTATGGATAACAGAGGGTAAATGAGAGAGATGCAGAGAAATGGACAACTGCCATGTATGACGATAAAAGAAACTGAAGGGAGATTGAGACAAGAGAAACAGAGAGCTTCTTCTATTA

Function

symbol description
nog5 Predicted to act upstream of or within several processes, including cartilage development; negative regulation of BMP signaling pathway; and negative regulation of cell differentiation. Predicted to be located in extracellular region. Is expressed in retina.

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02183987_02191396.mRNA True 1869 mRNA 0.49 11 2183560 2191503

Neighbor

gene id symbol gene type direction distance location
CI01000113_02166259_02170108 JMJD8 coding upstream 13285 2166259 ~ 2170275 (+)
CI01000113_02156565_02157428 NA coding upstream 26096 2156227 ~ 2157464 (+)
CI01000113_02147391_02148242 NA coding upstream 35126 2147391 ~ 2148434 (+)
CI01000113_02133051_02135286 NA coding upstream 48062 2132839 ~ 2136508 (+)
CI01000113_02111396_02122911 NA coding upstream 60523 2110635 ~ 2123037 (+)
CI01000113_02203100_02206995 HSPBP1 coding downstream 11597 2203100 ~ 2207083 (+)
CI01000113_02210912_02211861 NA coding downstream 19409 2210912 ~ 2212087 (+)
CI01000113_02216033_02222467 NA coding downstream 24444 2215947 ~ 2222467 (+)
CI01000113_02227694_02239947 WIZ coding downstream 36191 2227694 ~ 2240092 (+)
CI01000113_02293534_02295639 NA coding downstream 100841 2292344 ~ 2295688 (+)
G331831 NA non-coding upstream 29443 2153717 ~ 2154117 (+)
G331818 NA non-coding upstream 65311 2117935 ~ 2118249 (+)
G331816 NA non-coding upstream 66409 2112683 ~ 2117151 (+)
G331937 NA non-coding downstream 55468 2246971 ~ 2247424 (+)
G331939 NA non-coding downstream 58431 2249934 ~ 2250354 (+)
G331971 NA non-coding downstream 166686 2358189 ~ 2359966 (+)
G331948 NA non-coding downstream 172071 2363574 ~ 2365297 (+)
G331976 NA non-coding downstream 177381 2368884 ~ 2369182 (+)
G331759 NA other upstream 354657 1668002 ~ 1828903 (+)
G331767 NA other upstream 520305 1662785 ~ 1663255 (+)
CI01000113_01424978_01425704 NA other upstream 757854 1424968 ~ 1425835 (+)
G331615 NA other upstream 936987 1246291 ~ 1246573 (+)
G331487 NA other upstream 1261427 917735 ~ 922133 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 151918 2342987 ~ 2346006 (+)
CI01000113_02548934_02576888 TBL3 other downstream 377264 2548934 ~ 2577790 (+)

Expression


Co-expression Network