CI01000113_02321704_02328603 (FARSA, FARSA.S, SYFA)


Basic Information

Item Value
gene id CI01000113_02321704_02328603
gene name FARSA, FARSA.S, SYFA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2321704 ~ 2328863 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02321704_02328603.mRNA
ATGGCTGACACCGGGCTTTTAGAATCACTCTTACGGCTAGTGGAGAAGGTAGACGGCGGCATTGACAGCCAGGATGTGGCCGTGGATCTCGGGGTGGATCATCAGGTGATCGTCGGCGCGGTGAAGAGCCTGCAGGCGCTGGGAGAGGTGATCTCGGCCGAGCAGAAGTCCTCCAAACACTGGGAGCTGACAGGGGAGGGGTGTGAGATCGCGGAGCAGGGCAGTCATGAAGCCCGAGTGTTCAACGCCATCCCTGCCGAGGGTCTGCCGCAGAATCAGCTCATGAAAATGCAGAGCGGGAAGGTTGGTTTCAGCAAAGCCATGTCCAACAAATGGATCCGTCTGGATAAAGCTCACGAGGGAGGACCAAGAGTCTTCAAAACCGTGGAAAGCATTGAGGATACAGTAAGGGACAAACTACAGCTGGTGCAGAAGGGACAGTCGGCAAAACTAGAGGAGAAAGAAAAGAATGAACTGAAGAAACGTAAACTGCTAGCCGAAGTGACTGTTAAGTCTTACTGGATCACTAAAGGAAGCAGCTTCAGTACCACCATCACCAAACAAGAGACAGAACTGACTCCAGAGATGATCGCCAGTGGCAGCTGGAAGGAGAAGAAGTTTAAGCCGTATAATTTTGAGGCGATGGGTGTTGCTCCAGACTGCGGACACCTGCATCCGCTCATGAAGGTCCGGACACAGTTCAGGCAGATCTTCCTGGAGATGGGATTCACGGAAATGCCCACCAATAACTTCATCGAGAGCTCCTTCTGGAACTTCGATTCTCTGTTCCAGCCCCAGCAGCACCCAGCAAGAGACCAACACGACACCTTCTTCATCTCTGACCCAGCACTGGCTCACGAGTTTCCTCAGGATTATCTGGAGAGAGTGAAGAAGGTTCATTCTGAAGGAGGTTATGGATCACAGGGATACAAGTATGACTGGAAGATTGAAGAAGCTCAGAAGAACCTCCTTCGAACGCACACCACGGCGGTCAGTGCTCGGATGCTGTATAAACTCGCACAGCAGGAGAAGTTCACACCAGTGAAGTATTTTTCCATTGATAGAGTTTTCCGTAACGAAACTCTGGACGCCACCCACCTTGCGGAGTTTCACCAGATCGAAGGCGTTGTGGCCGACTACGGCCTTACCCTGGGAAACCTCATGGGCGTCCTGCACCAGTTCTTTACCAAACTAGGAATCACAAAATTGCGTTTCAAGCCTGCGTACAACCCCTACACTGAGCCAAGTATGGAAGTCTTCAGCTATCATGAAGGTCTGAAGAAGTGGGTGGAGGTGGGTAATTCTGGGGTCTTCAGACCTGAGATGCTGCTGCCCATGGGTTTGCCTGAAGGAGTGTCAGTCATTGCCTGGGGTCTGTCCTTGGAGAGGCCCACCATGATCAAGTACGGAATCAACAACATCCGAGAGCTTGTGGGCCACAAAGTGAACCTACAGATGGTGTACGACAGCCCTATATGTCGACTGGACTCTTAAATGATATGCACTCATCATAAGGCTCAGCATATGGATTCATTTGTGCTCTCATGACTTATCTGCATTGTTATTGTCTATTTAAGCCATAACACACACCCTGAACTACGCTTTGTTGCTCCGGCATTAGTTATGAGGACTGTGTTGAACAGGCTGATGTAAAAGCGGAGGAAAAGATTCACGTCTTCGCATGAAGAGCGTTTCATTGACCCTGTTACAATGTCACCGCCTGATATAGAAATCTCTACTGTCCTCCACTTCAA

Function

symbol description
farsa Predicted to enable phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and protein heterotetramerization. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be part of phenylalanine-tRNA ligase complex. Predicted to be active in cytosol. Orthologous to human FARSA (phenylalanyl-tRNA synthetase subunit alpha).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02321704_02328603.mRNA True 1754 mRNA 0.50 13 2321704 2328863

Neighbor

gene id symbol gene type direction distance location
CI01000113_02300492_02320320 ILF3B, ILF3 coding upstream 1134 2297820 ~ 2320570 (+)
CI01000113_02293534_02295639 NA coding upstream 26016 2292344 ~ 2295688 (+)
CI01000113_02227694_02239947 WIZ coding upstream 81612 2227694 ~ 2240092 (+)
CI01000113_02216033_02222467 NA coding upstream 99237 2215947 ~ 2222467 (+)
CI01000113_02210912_02211861 NA coding upstream 109617 2210912 ~ 2212087 (+)
CI01000113_02342987_02345449 SYCE2 coding downstream 14124 2342987 ~ 2346006 (+)
CI01000113_02387553_02403367 SLC44A2 coding downstream 58690 2387553 ~ 2403367 (+)
CI01000113_02418950_02434326 NA coding downstream 90087 2418950 ~ 2434456 (+)
CI01000113_02548934_02576888 TBL3 coding downstream 220071 2548934 ~ 2577790 (+)
CI01000113_02623348_02657507 TOM1L2 coding downstream 294274 2623137 ~ 2657507 (+)
G331939 NA non-coding upstream 71350 2249934 ~ 2250354 (+)
G331937 NA non-coding upstream 74280 2246971 ~ 2247424 (+)
G331831 NA non-coding upstream 167587 2153717 ~ 2154117 (+)
CI01000113_02133051_02135286 NA non-coding upstream 185039 2132839 ~ 2136508 (+)
CI01000113_02111396_02122911 NA non-coding upstream 200745 2110635 ~ 2123037 (+)
G331971 NA non-coding downstream 29326 2358189 ~ 2359966 (+)
G331948 NA non-coding downstream 34711 2363574 ~ 2365297 (+)
G331976 NA non-coding downstream 40021 2368884 ~ 2369182 (+)
G331977 NA non-coding downstream 40909 2369772 ~ 2370011 (+)
G331978 NA non-coding downstream 41511 2370374 ~ 2370577 (+)
G331759 NA other upstream 492801 1668002 ~ 1828903 (+)
G331767 NA other upstream 658449 1662785 ~ 1663255 (+)
CI01000113_01424978_01425704 NA other upstream 895998 1424968 ~ 1425835 (+)
G331615 NA other upstream 1075131 1246291 ~ 1246573 (+)
G331487 NA other upstream 1399571 917735 ~ 922133 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025143 ilf3b coding NC_007114.7 CM002887.2 13842554 ~ 13901074 (+)