XLOC_011262 (clec14a)


Basic Information

Item Value
gene id XLOC_011262
gene name clec14a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 10242166 ~ 10243888 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022480
ATAGTTGCGATTGTTTTGCTTCGGCAGCACCACCACCCAAGAGGAAGCGAATGGCTGTATCAAGGCTGAACAGACTTCCTGTGCTTGTTGTCTTGGGAGGACCTCACAGGGACGGCTAAGAAAGCCAGGGGGAGAAAAAGCAGACAATATCATTTTAGTTTGAGTCTGCGAGCAGAGAGCAGACATGGATTTCTGGATGGTATTACATCTTGTGAGCCTTCTCAACATGGCACACTATTCAGCCGAATTGTCCTTCTACACTGTTCACTTGAACAAAAACTCATTCACAGATGCGCAGAATTATTGCAAACCTGGAGGTGTCCTGACCGACATTCCGGATAAAAAGGAAATGGACAAGATCCTAAAAACAATCTGGGACAAGACCAACAGAACGGCTGCTTCATTTTGGGTTGGACTAAAGAAGGATAAAGGTGTGTGTGTTAAACAAGGATCACCTCTTAAAGGATTCCACTGGACGGTGGACAACAGCACTCAATCTGAAGGCAACATGTGGAAATCTGAGCCTTCGCACACTTGTACGGATGTTCGCTGCGGGCTACTTTCAGTGGAATATGGAAACTCTGGTGCGACAAACTGCGGATTTATGGATGCCACCTGCAAACAGCAACATCCTTTCATTTGCAAGCGAAATATGGAGACGATGTGCCAACGACCGGAGATACCTAAAACACAATACATAATCGACTATCCGGAAGATCCGTACACATGTCAGGTTGTTTGCAATTCTGGTGCCAATTACACTTTGACATGCTCACATGATTCAGTTTGGACCATAGTCGGGAAGGAAAACATTGATGTGTTTCAACTCTGCCTGGAATGTGTGAGCGGCTACAGGAGGGATGCATCCGGAAACTGTGAGGATATAAATGAATGTGAAGAATCAAACCCGTGCAATCATGGATGCAAGAACACATACGGCTCCTACATTTGTGACGAACCAAAACTACCCACAACTCATCTGAAAAGTGATGAATCTTCACACAATGATGAGGGCAAATCTGTGCAACCTCAACCTACAGTTCTGTCTGAGGACGTCAGGATGAATGACACAGGGGTGCAGATTGAGGAGAGCGTTGGAGACATTTCAAATATCATAGTACCTGTGATTATAGCCCTGCTGATTTTCATCGTACTAGTGGTCATTGTCGCGGCCATTGTGAAAGGATGCCTCAGGAGGAGAACCGTAAAACGGGCCCGGAGAAAGGCGGAGTCTGTGGCTCTGAATGGATCCAGCTCCATGGAGAAGGTGAATGAAAAAGAGGAAACCTAAATGGGAGAGACTGTGCAAATGTGACAGATAACTCAATGTGACACATGCAGGCGACTACAGAGAGGGCTTACTGGATGATATTACTCTCTCAGAACATTTGGGTTTGAGAGTCATAAGAGAGCTGTGTAAATGCTGCCTTTGAATTTCATTTGCCGTTCCCGTCTGATTTGTTTTTACTCACAGTTGAAATCAGGGTCTTTCTGCTGATGTGGATTTTGAAATTAGTGATTAGATGGATGAAAATAGCGTACTCTGTCTTTGTTTACTCCTACCTAGCTGATATTTAAATGCACCTATACTTGGAGATGTAAGAACTGTAGATGATGTTGTGATGTTACTGCCATTGGATCTGTTTTCTAATTATATATTAAGCAACATTGGAGATTTATATGTCTGGAGGGTTATGAATAAAGGCGGACATTAAAGCTGTAA

Function

symbol description
clec14a Predicted to enable extracellular matrix binding activity and extracellular matrix protein binding activity. Acts upstream of or within angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in endothelial cell; intermediate cell mass of mesoderm; mesoderm; pectoral fin; and vasculature. Orthologous to human CLEC14A (C-type lectin domain containing 14A).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0001525 angiogenesis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:1990430 extracellular matrix protein binding molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG:

id description
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-030131-5536 Predicted to enable extracellular matrix binding activity and extracellular matrix protein binding activity. Acts upstream of or within angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in endothelial cell; intermediate cell mass of mesoderm; mesoderm; pectoral fin; and vasculature. Orthologous to human CLEC14A (C-type lectin domain containing 14A).

Ensembl:

ensembl_id ENSDARG00000103533

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022480 True 1723 mRNA 0.44 1 10242166 10243888

Neighbor

gene id symbol gene type direction distance location
XLOC_011261 sec23a coding upstream 96734 10090638 ~ 10145432 (+)
XLOC_011260 srp54 coding upstream 152140 10074360 ~ 10090026 (+)
XLOC_011259 NA coding upstream 299443 9916763 ~ 9942723 (+)
XLOC_011258 NPAS3 coding upstream 348009 9308425 ~ 9894157 (+)
XLOC_011257 akap6 coding upstream 974991 8988374 ~ 9267175 (+)
XLOC_011263 foxa1 coding downstream 74183 10318071 ~ 10320932 (+)
XLOC_011264 tyro3 coding downstream 257759 10501647 ~ 10553538 (+)
XLOC_011265 mgaa coding downstream 322602 10566490 ~ 10590378 (+)
XLOC_011266 mapkbp1 coding downstream 349510 10593398 ~ 10703926 (+)
XLOC_011267 tbpl2 coding downstream 494238 10738126 ~ 10747553 (+)
XLOC_011252 FO818681.1 non-coding upstream 1769949 8472101 ~ 8472217 (+)
XLOC_011250 NA non-coding upstream 1926709 8308590 ~ 8315457 (+)
XLOC_011249 BX248131.2 non-coding upstream 1941662 8300390 ~ 8300504 (+)
XLOC_011246 NA non-coding upstream 2012283 8225655 ~ 8229883 (+)
XLOC_011269 NA non-coding downstream 527965 10771853 ~ 10775305 (+)
XLOC_011272 FP102895.1 non-coding downstream 1130886 11374774 ~ 11374896 (+)
XLOC_011273 NA non-coding downstream 1134104 11377992 ~ 11379853 (+)
XLOC_011274 CU076099.4 non-coding downstream 1158059 11401947 ~ 11401960 (+)
XLOC_011275 NA non-coding downstream 1174595 11418483 ~ 11419622 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_03868160_03869179 NA coding CI01000310 null 3865704 ~ 3869906 (+)