CI01000113_02491883_02493061 (NFIL3-6)


Basic Information

Item Value
gene id CI01000113_02491883_02493061
gene name NFIL3-6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2490653 ~ 2493575 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02491883_02493061.mRNA
AGTGTAACAGAGAACACCATTAAGTAAGGCAGGATTCCATGAGGAAAGTGACTCACTGGGACAGGAAGAAGATAAGACTCACTCATGCACAAGCTGTTCCGCAAATAGGTCAACGAGGAGGCATTTCTGGTTTACATAAAGTAGCTGCTTACTGTTGTTGAAAATACTCTTCTATGTAAAGAAATTTGAGTGCTCTAGTAGGTTAAATCTTGCTACGTGAGAATGTTCATTTGTTGATGTCACTTTGCGTAAGATGGCTATATAACTGTACAGTTGTTAACCTGATATTATGTGGTGTAGTACGAACGTACTGTGCTTTGCCACTGGGAGGTAATGAAGTTACATAACATTGTGTTGTAACTGATCTTACGTAACTGTTCTTGTGTTCTTTCTGCCACCAGGTGGAGCCACTGTTGAGTCAATAGCATCTGAAATTGACCAGACACTCAGAAACACAACAGAGACCAACCACAACTTTTAACATTACAATTAAGAAGAATTAAATAACTTCAAGATGTTTGAAGAGCCATCTCAGGAGATGAGGGAGCAGAATGCTGGAGTTTTGAAGGCTATTGAACCCTCCACCACCACAGGGTTGCTGGGGTTAAATGTGGCCGCTCCCAGCAGCACAATGTCTTTCACGGATGAAGCGGTGTCCATCCTGACGTCAAGCAGTTTGCTTGCACGCTCGCTTCTGGGCCGAACATCGGCACTCAAACGTGAAGATGTCGCTCCAGCCAGCGCAAGCACTGTGAGACGTAAGCGGGAGTTCATTCCTCATGAGAAGAAGGATGAGGGCTACTGGGACAAGCGCAAGAAAAACAACGAAGCAGCGAAGCGTTCTCGCGAGAAACGGCGCGTAAATGATATGGTGCTGGAAAACCGTGTGCTGGCGTTGCTCGAGGAGAACGCCAGGTTACGAGCGGAACTGCTTGCACTGAAATTCCGCTTCGGCCTCATTAAAGATCCCTCGAACGCTTCCATACTTCCGCTCACCACAGGAACATGCGTCCCACAACCTTCAGCGCCACATTACTACCTTCCACGTGGGGACGGCGCTCACCATGCTGGTCCAATGTTGTCAAATCAGTCCCCTGCTCAAAGTGGGCCACAATCTGGGCGAAGTATCAGAGATACAAGCAGTATGTCAGAAGATTCGGGTTTCTCCACGCCTGGTGGGTCCAGTGTCGGTAGTCCCGTCTTCTTTGAGGACAGACTGAGCGACCATGGAAAGTTATCCCCGCATCAAGCAGATGAGCTTGGCTATGAGTCCCATCACTCTCCAAATGATGTTTTAGCAATGGGACACGTCACCATGTCATCCAACCGGATGGAACCGATGGATGGTATGAAGAGCCTTCCGCACAAGCTGAGGTTCAAGTGTCCGGGCGGCGGCGAATGCGACAATCCTGGAGATCGCCACAGTCCCGTGCTGCCAACGGGGGGCGCTAGAGGTCACAGCATTTTAAGTGAAGGAGCAGGTTACTGGACCCAGCAGGAGGGTGAAGACACCCGAAAAGTAACACCACCGCCGCAGCAGCAGCACAGAAATTACAGCCACAACTTGAACCCAAACGAATCGCAATACCAGGCCGAGAACAGCATGCTCAAATCTCAGCTCAGCTCTCTCAGCGAGGAGGTGGCCCAGCTCAAAAAGCTCTTTTCCGAGCAGTTGCTCACCAAAACTAATTAATTAAGACATTGTAAAGGTTTGAGCAACCTAGAACATTGCAAATATTCACAGTCAAACTCATGAACATCCATGGATCGTGAATTGAAAGAAAGCAGCATGTGCATCACTACCTCTTCACACTCAGTCATAACCAAACGGACCTTGCATATCCACCTTATTTTTCAACGAAAAAAGCAATTTTCCGTGAATGTACGAGATTTCCGATTCATTAACCACTATGTTATTTACGCAATTTTTAAGAAAAAGCATAACACACTGTTTTTTTACAACTAAAAGAACTGGAAGCGGATGACACCGGAAGCCTCGCACATTCAAGCTCCAAATGGCCGCTCTTACGTTAAAAATAAGGTGGATAATGGCTTCTTTTTTTTTACTCCTTCCTTCAACTTTCATTCAGGACCGTGCAAGAGCATTCCAGTGGCATCGGGACATGTCAGCTGCAACGCCTCACCTCAATTCTCAATTCGTCAAACACTGTGATCTTGCTCAAAAACACCTCAGGCTGTACAACAATGTCTGCATACATAGAGCTGTCTGTCACTGTAAATGTAAAACAAAGCATAACATCCTCTGTCGTAACGTCATTCCTGTACTACGTGCCAACACTACTTAAACACTTGTCAGATAGCGAGATGAGATACGTGGTGAGCCTGATAAGTCTTCACACTGTAATGTTCTCCTGTGGTTTGACAGATCTATACTGCGACTGCTGTGGGCTCATGAAGTGATTTATTGCAACATATATCCTGATTAAAGCGGAACAGGAAACACCTTGGAAAAGGCAAATAATGGAATTCAGGGGCCGTTCACACAGAACACATTTTTTCATTTCACTGCGCTACTTTTCCATTATTTTTCTATGTAAACGCACTCTAGACTGACGTGTTTGACTGTTGTGCTCGCATCTTGCATTTTTTGCAGTGCCATTCTTAAAATCAGTTCAACTTTTAAAAAAAATGCATCTCGAGACCTTGTGTTTTTTCCCTATTCCACTGACCTGTGTGAACCGGCCCTAATTGTTTATTGTCATCGTCATGAACCAGTAGCAACTCAGCACTGAATGACTGCATAATTTTTTTCATACAGATCACTTATCTGCAGTTGTCCAGATAAGGATATTATAATTTGATCTACACTGTTACTTGCATTTTGATGGTGAAATTTCTGTTGTCTTGTAAGTTTTTGTGTATTTGTACAAAAAAATATACATTATATGTGTGTGTGAATAAA

Function

symbol description
nfil3-6 Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within circadian regulation of gene expression and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epiphysis; retina; retinal inner nuclear layer; and retinal photoreceptor layer.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02491883_02493061.mRNA True 2923 mRNA 0.45 1 2490653 2493575

Neighbor

gene id symbol gene type direction distance location
CI01000113_02479865_02481505 NA coding downstream 7127 2478817 ~ 2483526 (-)
CI01000113_02356565_02370009 NA coding downstream 120644 2356565 ~ 2370009 (-)
CI01000113_02348726_02354574 GCDHB, GCDH.L, GCDHA, GCDH coding downstream 136079 2348606 ~ 2354574 (-)
CI01000113_02334123_02335356 NA coding downstream 155297 2333511 ~ 2335356 (-)
CI01000113_02193825_02200601 TUBB4A, TUFM coding downstream 289378 2193355 ~ 2201275 (-)
CI01000113_02542996_02548587 SCO1 coding upstream 49421 2542996 ~ 2548587 (-)
CI01000113_02585185_02588728 NOXO1 coding upstream 91117 2584692 ~ 2588797 (-)
CI01000113_02604593_02611740 GID4, CQ039 coding upstream 110958 2604533 ~ 2611990 (-)
CI01000113_02614236_02620012 NA coding upstream 120651 2614226 ~ 2620012 (-)
CI01000113_02719034_02729100 RAI1 coding upstream 225167 2718742 ~ 2729100 (-)
G332919 NA non-coding downstream 27090 2463319 ~ 2463563 (-)
G332917 NA non-coding downstream 31065 2459201 ~ 2459588 (-)
G332898 NA non-coding downstream 35503 2428858 ~ 2455150 (-)
G332894 NA non-coding downstream 71442 2413709 ~ 2419211 (-)
G332872 NA non-coding downstream 159695 2304266 ~ 2330958 (-)
G332925 NA non-coding upstream 3863 2497438 ~ 2497705 (-)
G332863 NA non-coding upstream 57953 2551528 ~ 2564174 (-)
G332960 NA non-coding upstream 73865 2567440 ~ 2567846 (-)
G332961 NA non-coding upstream 74297 2567872 ~ 2568105 (-)
G332962 NA non-coding upstream 75078 2568653 ~ 2577002 (-)
G332837 NA other downstream 239440 2250845 ~ 2251213 (-)
G332649 NA other downstream 342095 2147214 ~ 2148558 (-)
G332160 NA other downstream 2043816 390227 ~ 446837 (-)
G332210 NA other downstream 2441168 47990 ~ 49485 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026192 nfil3-6 coding NC_007114.7 CM002887.2 14099693 ~ 14103551 (-)