CI01000113_02548934_02576888 (TBL3)


Basic Information

Item Value
gene id CI01000113_02548934_02576888
gene name TBL3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2548934 ~ 2577790 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02548934_02576888.mRNA
AGTTCACTGTCGCTCGCGTTTTAATTTTGACGTCATATTCGTGCGACATTTGCATGAACACATGCACCATGCGTGTAAAATCTTGAGTTATGCAGTCTCCAGCAAAATAGAGCCGTTCTATAAGGGAGGCAAAGTACAGATAAGTCGTGATGAACAGTACATCTTCTGCACATGTGGATCAAGAGTCAACATTTTGCAGATCGATACAGGGAAAGTCATCCATAGTATTGAGCAGGATGATCAAGAGGACATCACCTCATTCTCTCTCAGTCCTGATGATGAGATGCTGGTGACCGCCAGCAGGGCTTTGCTCTTGAAGCAGTGGGACTGGAAGCAGGAGAAGTGCACCCGGTCGTGGAGGGCCATCCACAATGTGCCTGTGGCCAGCATGACCTTTGACTGCACCACCACCCTGCTGGCGACAGGAGGTTGTGATGGCACCATCAAGCTGTGGGATGTTGTGAAGCAGTACTGCACACACAATCTGAAAGGATCATCTGGTGTTGTACATTTGGTTGAGTTTCATCCAGACATCAGCAGGCTGCAGCTCTTCTCTTCCTCTGTCGACTGTGGGATCCGTATCTGGGATCTGCGAACCAGCAAGTGCGTCTGCATTTTGGAGAGCCACTACAGTGCCGTCACATCGCTGGCCTTCTCTCCTGATGGCCAAACACTCGTCAGTTCTGGCCGAGACAAAATCTGTTCAGTGTGGGACCTGAAGGAGAAGGCGGTGAAGAGGACAGTCCCTGTCTATGAGGCTGTGGAAGGTGTTGTTCTTTTGCCGGGGACGGGCGATTACTCTCAGATGGGTGTGAAGAGTGACAGTTTACACTTTGTCACGGCTGGCAGTAAAGGTGTTCTTCGAGTGTGGGACTCCAGCTCAGCGCGCTGTGTGTTCACGCAGACGCTGCCTGACGCTCCAGCTCTCAGCACAGAGGAGGCCGATCTGGACCCGCGCAGTCTGATGCACCTTCTGCCCATGCCTCAGTCCAACAGACTGGCCACAGTCACCGCAGAGCACAACATCCTCATCTATCAGATGCCCTCGCTCACCATACAGCAGCAGTTTGTGGGCTACAATGATGATATCTTGGATGTGAAGTTCCTGGGGAAGGACGACACGCACATCGTTGTGGCCACTAACAGCTCTCAGCTGAAGGTGTTTGAGTTGGCCACTAACAGCTGTCAGATTCTGTATGGACACACAGATACAATCCTATCTATTGAGGTGTTCTGCAAAGGCTCCATGTTTGCCAGCTGTGCAAAGGACAAGTCCTTGCGGCTGTGGAAGATGGATCCGACGAGCGGCCTTGTGCACTGCGTGGCTCAGGGCAGCGGACACTCCAATGCCGTGGGCTCTATCGCCTGCTCCAGGTTAAAGAAAGTCTTCCTGGTGTCAGGCAGTCAGGACTGCACTATCAAGGTGTGGGAAGTGCCTGACCCTCTTCCCGCCCTGGGATGTGAACCTGGCTTGATGACGGCACGACTCACAGAGAAAGCTCACGACAAGGTTGGTCTTTGCCCTTGTCACGTTCACTCTCACACAGGAGATGTGTTCACCGAAACTGTCAGTGGTTCTGATGGACTTGTGAAGTTGTGGACAATAAAAACGAACGAGTGTGTGAAAACATTTGATGCTCACCAGGACAAAGTGTGGGCTCTGCATGGCAGCAGCAAAGACGACCTGATGGTGACGGGATCAGCCGATTCCACCATCACGCTGTGGAAGGATGTGACAAAAGTGGAGTTGGCGGAAGAGCAGGCCAAACAAGAAAACCAAGTCCTTAAGCAGCAGGAACTGTCAAATTTACTTCATGAGAAGAAATACCTGAAGGCTCTGGGTATCGCTATCTCTCTGGATCAACCGCACACTGCCTTACGAGTCATCAGAGAAATTCGGCAGCAGGAGCATGGACTACAGGAGCTAGAAAAGACCCTCCTGAAACTCCGTCAGGATCAAAAAGAGTCGGTGCTGCGCTACTGTGTGGTGTGGAACACTAACTCGCGCAGCTGTCTGGACGCTCAGGCCGTCCTGCAGGTGCTGCTCACTCACCTGAGCCCAGAGGAGATGCTGCAGTATCAGGGGGCTCGGACTCATCTCGAGGGCCTCATCCCGTACACAGAGAGACACATGCAGAGAATCGGCCGTCTCCTGCAGGCCTCAATGTTTCTGGATTACATGTGGCAGAAAATGCGTATTACAGGTGGTAAAGAGAGGTAAAAACAAGTTCTCCAAACTTCCTGGTTGTGTATTCATTAACTAGTCAGCGGTATTTGCTAAGGAAAGAATCATTATTTTTGCGCATACCCAGGGTTAAATGGGTCATGAATTGAGAAATCAAATTTTCCTTTGATCTTTTGACATACATTTGAGCTTGAAAGTTTACATACCCCTTGCAGAATCTGCAAAAATGTTAATCGTTTTAACAAAATAAGAAGGATCATAGTTTTTTATACAATTACATTTTTATGATCCTCCTTATTTTGTTAAAACGATTAACATTTTTGCAGATTCTGCAAGGGGTATGTAAACTTTCAAGCTCAAATGTATGTCAAAAGATCAAAGGAAAATTTGATTTCTCAATTCATGACCCATTTAACCCTGGGTATGCGCAAAAATAATGATTTGTTCTGTAAGTTTTGGAACTCAAAACTTCCTCATTAGTCCAAAAACTGCTTTTATTGAAGCCAAGCTCCAAAAACTCGTCTCATTTCAGATTTTGTCACGTTATTACATCTGCAGAAGAAAATCAACGCCTTAGAAAATAGCTTATTACTTATACGTTTTTTTTTTTTATGTAAAAATATGGATAACATTATAAGTGGACCTCACAGAACATTTATAATTAGTTTTTAATGCAGTTTATGACCACTTCAATGGATTTGAACAAACCCTTAAATATTAGTATTAAACTTTGGTGCAAAACTAGTCTTGTATGTTGGTGTCATGGGTATGAATTACCAAAATGATCTTGTTAAATAGAACTGTTCTATTACTTTTTCTTTTCTAAGTAAAAGTAAAAGATTTGCTTTTTTTTTATTATTTAAAAAAAATAATTTTATTCAGGTAGCAAGTTTTTTTCAAAATAGACATCAACATAGAAAAGTGTCACATACAAAATA

Function

symbol description
tbl3 Predicted to enable U3 snoRNA binding activity. Acts upstream of or within lymphocyte differentiation; regulation of cell cycle process; and thymus development. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; eye; fin bud; gut; and hematopoietic stem cell. Orthologous to human TBL3 (transducin beta like 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02548934_02576888.mRNA False 3123 mRNA 0.46 20 2548934 2577790

Neighbor

gene id symbol gene type direction distance location
CI01000113_02418950_02434326 NA coding upstream 114478 2418950 ~ 2434456 (+)
CI01000113_02387553_02403367 SLC44A2 coding upstream 145567 2387553 ~ 2403367 (+)
CI01000113_02342987_02345449 SYCE2 coding upstream 202928 2342987 ~ 2346006 (+)
CI01000113_02321704_02328603 FARSA, FARSA.S, SYFA coding upstream 220071 2321704 ~ 2328863 (+)
CI01000113_02300492_02320320 ILF3B, ILF3 coding upstream 228364 2297820 ~ 2320570 (+)
CI01000113_02623348_02657507 TOM1L2 coding downstream 45347 2623137 ~ 2657507 (+)
CI01000113_02685260_02707606 SREBF1 coding downstream 107470 2685260 ~ 2708849 (+)
G332039 NA non-coding upstream 8279 2540427 ~ 2540655 (+)
G332009 NA non-coding upstream 10572 2537745 ~ 2538362 (+)
G332037 NA non-coding upstream 30782 2517841 ~ 2518152 (+)
G332017 NA non-coding upstream 89463 2459189 ~ 2459471 (+)
G331981 NA non-coding upstream 92427 2379240 ~ 2456507 (+)
G332011 NA non-coding downstream 24548 2602338 ~ 2604908 (+)
G332054 NA non-coding downstream 125144 2702934 ~ 2703362 (+)
G332057 NA non-coding downstream 133886 2711676 ~ 2711928 (+)
G332058 NA non-coding downstream 134367 2712157 ~ 2712373 (+)
G332098 NA non-coding downstream 207630 2785420 ~ 2785663 (+)
G331759 NA other upstream 720031 1668002 ~ 1828903 (+)
G331767 NA other upstream 885679 1662785 ~ 1663255 (+)
CI01000113_01424978_01425704 NA other upstream 1123228 1424968 ~ 1425835 (+)
G331615 NA other upstream 1302361 1246291 ~ 1246573 (+)
G332042 NA non-coding upstream 11520 2555773 ~ 2557247 (+)

Expression


Co-expression Network