CI01000113_02685260_02707606 (SREBF1)


Basic Information

Item Value
gene id CI01000113_02685260_02707606
gene name SREBF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2685260 ~ 2708849 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02685260_02707606.mRNA
ATATGCTCCAGCTTATCAACAACCAGGACATGGAGTTTGGTGGGCTGTTTGATCACACTTCATTTCCTGCTCCCGCAGCGCCCACGCAGGAGCTCTCAGCCCTGCCTCACTCCAACCCTTCCTCTCCTCCACCCACCTCTTCTACGCCCACCAACACCTCCTCCATCCTCAGCAGCAGCCCACACCTGGATGCCCTGCTGGGTCCCCCCATCACCCGCAGTTCCTCCATCCCGGACAAAGTCTTCCACCCTCCCACTTTCCAGCAGTCTCCTCTGGCACAGGTGACCTCCACCCCTGCCAACCCTGCCACACTGCAGACCACGCAGCCCAAAGCTCAGCCCGCTCCATCTCCCAGCCTCCACCCTTCCACCCCGGCGGCCCAGAGCCAACCTGCCCCGGCTGTGAAGAGCCCTCCTGTGTTTGGCACCGCCCAGCAGGTCCTCTTCAGCTCACCAACACCCCAACCACCGCAGCAGCAGCAGCCTGTGGTCACTTACCCCATCCAGAACGGTTATACAGCTGTCACTCAGCAGAGCTCTCCTCAGCCAATCCCGAATCTCCCCGCCTCCCCACAGAATGTTCAGCCAATGGCCATCCAAGCCCAGGTGCATAGCCTCTCGACTTCACCAATCCTGACCACCTCCTCCAGCCCACCCACACAGACAATCTCCCCTCAGGTTCAGCAGGTTCCTGTTTTGTTGCAGCCGCAGTTCATTAAGGCAGACTCTCTCTTGCTCACAACTCTGAAGCCTGATGTAACCATGGTAACAACAGTAGCGTCACCCTGCATCACGTCGCTGGCTACATCCACTGCCCCAGTCCAGAACACCTCACTGCAGGCGCTGATGAGTGGAGGCACCATCCTGACCACCGTTCCACTGATGGTGGACACAGAGAAACTGCCCATCAATCGCATCGCCATCAGCGGGAAACCAGGGGGACAGCCACATAAAGGCGAGAAACGCACCGCCCATAACGCCATTGAAAAACGCTACCGCTCCTCCATCAACGACAAGATTATTGAGCTCAAAGACCTGGTGGCTGGGACGGAAGCTAAGCTCAATAAGTCGGCAGTGTTGAGGAAAGCCATTGACTACATTCGCTACCTTCAGCAGTCCAACCAAAAACTAAAGCAGGAGAACATGGCACTCAAAATGTCCATCCAGAAGAACAAGTCTCTGAAGGACCTTGTGACCATGGAGGTGGACGTGAAACCAGAAATCCCCACCCCTCCAGCATCAGATGTCGGCTCACCTCAATCCAGCGGCGCCTACTCCCACCACGGTAGCGACTCGGAGCCGGACAGCCCAATGGTAGAAGACAGCAAGCCTGTGGTGGAGAGGGCTGGAGGAATGCTGGATCGCTCTCGCATGGCTCTGTGTGCATTCACCATGCTCTTCCTGTCCTTTAACCCGTTGGCTTCTCTGCTGTGTGGCGGCTGGAGTAGCTCTGGGGCATCTGTCTCTGGACACACAGGAAGGAGTATGCTGGCAATGCAGGAAACAGCCGAGTCTTGGGGTTGGATGGATTGGATGTTGCCCACTCTTCTGGTGTGGCTGTTAAACGGTGTTCTGGTCGCTGGAGTTTTGATCCGACTGCTCGTGTATGGAGAACCTGTGACCAGACCTCACTCAGAATCATCTGTCCTCTTCTGGAGACACCGCAAGCAGGCCGACCTGGATCTAGCCAGGGGAGACTTTGCTCAGGCTTCTCAGAACCTCTGGACGTGTCTCAAAGCTCTCGGTCGACCTCTGCCCACTTCTCAACTGGACCTGACCTGTGCTATGTTGTGGTCCGCCCTGCGCCTGTGTCTGCAGAGACTGTGGGTGGGCCGCTGGCTAGCCAGCCGTGCCGGAGCCCTTCGTTCCAACCGCCCCCTACAGGAAGATGCCCGCAAGAGCTGCCGTGATGCCGCCTTGGTCTACCACCGTCTACACCAACTCCACATGACCGGTAAGCTCGGAGGAAGCCACCTCTCTGCCATCCACATGGCACTGAGCGCTCTTAACCTGGCCGAGTGTGCAGGAGACTGTCTCCCTGTTGCCACACTGGCAGAAATCTATGTGTCTGCAGCCCTGAGGGTTAAAACCAGCCTACCCCGTCTGCTTCACTTCACTACTCGAGTGTTCTTGAGCAGCGCTCGGCAGGCCTGTCTCTCGCCCAGCGGCAGCGTCCCTCCTGCCATGCAGTGGTTGTGTCACCCTCTGGGTCATCGTTTCTTTGTGGATGAAGACTGGTCCATACGCAGCACCCCTAAAGAGAGCATCTACAGCCAGGCAGGAAACTCAGTTGACCCGCTGGCTCAGGTGACGCAGGCGTTCCGGGAGCATCTGTTGGAAAAAGCCCTCTACTGTGTGGCACAGCCTCGAGGCGACAAGACCCTCACTGACGGGGATGGGGAATACTCAGACGCTCTGGAATACCTGCAGTTACTCACCAGCGCCTCAGACGCAGCAGGAGCCACAACACAGTCCTTCGCCATCGGATCAAACATGGCCACTGTCACAGGCTGTGACCCTCACTCCAAATGGTGGTCGTCAGTGGCCGTGGTGATAATTAATTGGCTCCAGGGCGATGATGTGGCAGCAGAGAGATTGTACCCAGCGGTGGAACACTTGCCCCGCAGCCTTCAGTCTGCTGAGAGTCCGCTGCCCAAAGCCTGTCTGAACACTTTTAAAGCGGTGCGCTCCCTGCTGGCCAAACCTGAGAACTACCAGCTCAGCCTCAGCTACTGTGAGAAAGCCAGCGGCCTGTTCAGAGACAGCCTCAACCTCGGCCCACACTGCACCACCAACACTCTAGACAAGCTGGTGCAGTTGCTGCTGTGTGATCTGTTGTTGGTGACGCGCACTAACGTGTGGAGGGAGCAGCAGGTGGCGTCGCAGCAGAGCTCGCCGACGGCCGCCTCACCTGCAGAGCTGCAGGGCTTCCAGCAGGACCTGAGCTCCCTCCGCAAACTCGCTCAGAGCTTCAGACCGGCCATGCGCAGGTTGTTCCTGCATGAAGCCACAGCTCGGCTGATGGCGGGAGCCAGTCCAACACGCACACACCAGCTCTTGGACCGCAGTCTGCGCCGCCGCGCCACGCCTGGAAGCAGAACAGAGGAGTGCGAGATGCGTCCAGGCCAGCGCGAGCAGGCAGAGGCCGTGATGCTGGCGTGTCGCTATCTGCCCCCTTCCTTCCTGTCCGCCCCGGGCCAAAGGGTGGGCATGCTGGTCGACGCCGCCCGGACGCTGGAGAAGCTAGGCGACAAACGCACCCTCCACGACTGCCAACAGATGATCATCAAACTAGGCAGCGGAACGACCGTCACGTCCACCTAGCCAACTACACACAACACACACACACACTAAAGAGCACTTTTACACACACACACCCCAACATCTCTCCACAGAGAATCAACACGCTCTTCGTTTCAGGCCTCAGTCAATGTCATCCAGGAACGCAAAGATGTTTTTTTGTTTTTTTTTCTCCCCAACAGTTCATCACTGCAGATCCAATTACAAGATGCATGGGCGATAACGGGACCCTATCCTTGATATTTTTGATATGAAATTAATTATTTAACTTATTTATATGCCCTACACAAAGATTGAACGGAAGGTATTTTTATTCGGTTTCCTTTGTGAAATGGCTTTGTGAAACGATGCACTGTCAGTGCTGACTTTGGCCACAAGATGGTGTTTTGGTGGGATAAACTGGATTCTGGTCCAACGGGTGCTTGAATTGGACACATATTGTAGAGCATTGCTTTACTATTAGCACCTTTTGAAAGAAAGAAACATTACGATAGAGGAAAACAACCGTGAGTTAAAGTAGTTCCTACTTACCTGTTATCGTCTGGGATGAATTCTACATATTGATTTGAGAAAATTGAGGCTTTATAAAAGTTCTTTCTTTGTATATATTTTAACTAAGTGTATTTATGATTTGTCTGACGCTGTAGGTGAGCAGTATTTGAAGAGGGGCTGATGGTCGATTTTGTCGTGCTGCTGAAATTTAACCAGTTTGAATGATTTGAAGTATTCATCAGAAAAAAAAACGGTTTCTACCTGCAGCCACAGTATGACTTTGTTCGCTGGATTTGTGTCCATTTGCACTATTTAGTGAGTGGGCTGCACGGTCACCTACAGCCCACCGTTTGCCATTGAATCCACTGTTTAATTTGTATTTCCAACCAGTTTGGTTGTAAAGTCTTCCATTGGAGTTAATATATCCAAATAATTCCATCTGCATTCGAATGTCATCAAAGTATTGATTATAAAGCAAAGACATCAGCGTTAATATCTTTATCCAAAGATAAGATTTGCTACCTGCAGCTCTTGTTAGGGAGAGAACTATATTTATATTTCATTTCTAGCCACCGTTATGTACGAACTCTGATTACTAGACACATTTTATATCCGCAGTAACCGTGAGATTTGCAATTGACATTCATTACTTGTACGCTAACTTTTCTGTAGTGCTTGTGATCGAGTCTCAAAGATGAACCGTGTTTAAACTTGCAGACGCACACATAGTATATCCTATATTGTCTTCTATTTGATTTTATTCTTAAGATTGTAA

Function

symbol description
srebf1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within liver development; pancreas regeneration; and type B pancreatic cell development. Predicted to be active in nucleus. Is expressed in female organism; liver; male organism; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in disease of metabolism and type 2 diabetes mellitus. Orthologous to human SREBF1 (sterol regulatory element binding transcription factor 1).

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K07197 SREBP1, SREBF1; sterol regulatory element-binding transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02685260_02707606.mRNA True 4566 mRNA 0.53 18 2685260 2708849

Neighbor

gene id symbol gene type direction distance location
CI01000113_02623348_02657507 TOM1L2 coding upstream 27753 2623137 ~ 2657507 (+)
CI01000113_02548934_02576888 TBL3 coding upstream 107470 2548934 ~ 2577790 (+)
CI01000113_02418950_02434326 NA coding upstream 250804 2418950 ~ 2434456 (+)
CI01000113_02387553_02403367 SLC44A2 coding upstream 281893 2387553 ~ 2403367 (+)
CI01000113_02342987_02345449 SYCE2 coding upstream 339254 2342987 ~ 2346006 (+)
G332011 NA non-coding upstream 80352 2602338 ~ 2604908 (+)
G332042 NA non-coding upstream 128013 2555773 ~ 2557247 (+)
G332039 NA non-coding upstream 144605 2540427 ~ 2540655 (+)
G332009 NA non-coding upstream 146898 2537745 ~ 2538362 (+)
G332037 NA non-coding upstream 167108 2517841 ~ 2518152 (+)
G332057 NA non-coding downstream 2827 2711676 ~ 2711928 (+)
G332058 NA non-coding downstream 3308 2712157 ~ 2712373 (+)
G332098 NA non-coding downstream 76571 2785420 ~ 2785663 (+)
G332069 NA non-coding downstream 78337 2787186 ~ 2788491 (+)
G332102 NA non-coding downstream 86734 2795583 ~ 2803940 (+)
G331759 NA other upstream 856357 1668002 ~ 1828903 (+)
G331767 NA other upstream 1022005 1662785 ~ 1663255 (+)
CI01000113_01424978_01425704 NA other upstream 1259554 1424968 ~ 1425835 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026918 srebf1 coding NC_007114.7 CM002887.2 62064805 ~ 62087346 (-)