Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_011265 |
| gene name | mgaa |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 10566490 ~ 10590378 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| mgaa | Contributes to transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including animal organ development; determination of ventral identity; and pathway-restricted SMAD protein phosphorylation. Part of SMAD protein complex. Is expressed in several structures, including gut; head; pectoral fin bud; and yolk syncytial layer. Orthologous to human MGA (MAX dimerization protein MGA). |
| id | name | namespace |
|---|---|---|
| GO:0001708 | cell fate specification | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0031016 | pancreas development | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0048264 | determination of ventral identity | biological_process |
| GO:0048565 | digestive tract development | biological_process |
| GO:0030513 | positive regulation of BMP signaling pathway | biological_process |
| GO:0048854 | brain morphogenesis | biological_process |
| GO:0003205 | cardiac chamber development | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0071141 | SMAD protein complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030603-1 | Contributes to transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including animal organ development; determination of ventral identity; and pathway-restricted SMAD protein phosphorylation. Part of SMAD protein complex. Is expressed in several structures, including gut; head; pectoral fin bud; and yolk syncytial layer. Orthologous to human MGA (MAX dimerization protein MGA). |
| ensembl_id | ENSDARG00000078784 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00022483 | False | 251 | mRNA | 0.47 | 2 | 10566490 | 10571035 |
| TCONS_00022484 | False | 11931 | mRNA | 0.43 | 24 | 10566495 | 10590071 |
| TCONS_00022488 | False | 12001 | mRNA | 0.42 | 24 | 10570906 | 10590378 |
| TCONS_00022487 | False | 11917 | mRNA | 0.42 | 25 | 10570906 | 10590378 |
| TCONS_00022486 | False | 11914 | mRNA | 0.42 | 25 | 10570906 | 10590378 |
| TCONS_00022485 | False | 11692 | mRNA | 0.42 | 23 | 10570906 | 10590378 |
| TCONS_00022489 | True | 538 | mRNA | 0.47 | 3 | 10578823 | 10581500 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_011264 | tyro3 | coding | upstream | 12952 | 10501647 ~ 10553538 (+) |
| XLOC_011263 | foxa1 | coding | upstream | 245558 | 10318071 ~ 10320932 (+) |
| XLOC_011262 | clec14a | coding | upstream | 322602 | 10242166 ~ 10243888 (+) |
| XLOC_011261 | sec23a | coding | upstream | 421058 | 10090638 ~ 10145432 (+) |
| XLOC_011260 | srp54 | coding | upstream | 476464 | 10074360 ~ 10090026 (+) |
| XLOC_011266 | mapkbp1 | coding | downstream | 3020 | 10593398 ~ 10703926 (+) |
| XLOC_011267 | tbpl2 | coding | downstream | 147748 | 10738126 ~ 10747553 (+) |
| XLOC_011268 | ATG14 | coding | downstream | 157988 | 10748366 ~ 10766679 (+) |
| XLOC_011269 | NA | coding | downstream | 181475 | 10771853 ~ 10775305 (+) |
| XLOC_011270 | pimr177 | coding | downstream | 227297 | 10817675 ~ 10822175 (+) |
| XLOC_011259 | NA | non-coding | upstream | 623767 | 9916763 ~ 9942723 (+) |
| XLOC_011252 | FO818681.1 | non-coding | upstream | 2094273 | 8472101 ~ 8472217 (+) |
| XLOC_011250 | NA | non-coding | upstream | 2251033 | 8308590 ~ 8315457 (+) |
| XLOC_011249 | BX248131.2 | non-coding | upstream | 2265986 | 8300390 ~ 8300504 (+) |
| XLOC_011246 | NA | non-coding | upstream | 2336607 | 8225655 ~ 8229883 (+) |
| XLOC_011272 | FP102895.1 | non-coding | downstream | 784396 | 11374774 ~ 11374896 (+) |
| XLOC_011273 | NA | non-coding | downstream | 787614 | 11377992 ~ 11379853 (+) |
| XLOC_011274 | CU076099.4 | non-coding | downstream | 811569 | 11401947 ~ 11401960 (+) |
| XLOC_011275 | NA | non-coding | downstream | 828105 | 11418483 ~ 11419622 (+) |
