XLOC_011269


Basic Information

Item Value
gene id XLOC_011269
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 10771853 ~ 10775305 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024595
ggttcattgcgatcccaaggttcactgcggtttccacaaggtaagtaaaaagtaaacaaataaacacgatttgttgataaagcatgtactgtgaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttctcacatataacgttggtcatgcattagaacaatatatacattttaagataaggaacagtgtaaccagattgttgttttccacaatagaattcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaaggtttattgtaaaaacaattattttccatgcctttaaaggaaaaaggcagaaattttgcccgtctgagcacattttattcattgtacaacacaaaactaaacaaaaaaaagcttaatctaccacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttatatatatatatacaggtgtacattataaggtgttcactgttcagatatgaatattttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttttttgattaattctTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCACCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCATAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatgtgattgtatgagataaaatgcatttattctttcactactattgtaataacagaaagaaacgcattagttttactattactattgtttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagtggccaaccatttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacatttttttgttgtttttatctggtacagctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcagtgtgtacttcattgtttccattagtccctgtatctgtagacctaggtgacagtgggctagagtaaaattttggttttatttaaactaaggcatactgatggccttttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaagatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTTATCTGTCCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAGATTAGAAGATAGAAACTGTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAaggtttatttacagtatttacagcTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTGATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACCTattggtttacttatttatttatttgtttgtttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGGTAACAATATCCAGTTGAATTTGTTTTAGTTGTTCAGTAACCTATTTAAATAGTATTGTGATTTTTTGATTGCTTATCATTGTAGACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcattttttttttcagtagcagaagcaaaaacaacaaacaacagaaGTGATATGGATGTCTTCGTCATATTGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagaggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCTTGCTTGTTTGCTACTGAAATGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaagaatattaatatatttttatgttgttgtgttcttcttttaagattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaatacgatGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGCAGGAGCAgagaacatacattttttttaaataaagctccagctga
>TCONS_00024455
ACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcattttttttttcagtagcagaagcaaaaacaacaaacaacagaaGTGATATGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagaggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCTTGCTTGTTTGCTACTGAAATGTActgattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaatacgatGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGCAGGAGCAgagaacatacattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtcatcatctataaccaaattgtctttttttttaaatacatagatatgtacagtatgtaagcattcc

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001757 somite specification biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007369 gastrulation biological_process
GO:0007379 segment specification biological_process
GO:0043034 costamere cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024595 False 3278 lncRNA 0.33 1 10771853 10775130
TCONS_00024455 True 774 lncRNA 0.37 3 10774345 10775305

Neighbor

gene id symbol gene type direction distance location
XLOC_011268 ATG14 coding upstream 5174 10748366 ~ 10766679 (+)
XLOC_011267 tbpl2 coding upstream 24300 10738126 ~ 10747553 (+)
XLOC_011266 mapkbp1 coding upstream 67927 10593398 ~ 10703926 (+)
XLOC_011265 mgaa coding upstream 181475 10566490 ~ 10590378 (+)
XLOC_011264 tyro3 coding upstream 218315 10501647 ~ 10553538 (+)
XLOC_011270 pimr177 coding downstream 42370 10817675 ~ 10822175 (+)
XLOC_011271 timm9 coding downstream 597226 11372531 ~ 11377195 (+)
XLOC_011272 FP102895.1 coding downstream 599469 11374774 ~ 11374896 (+)
XLOC_011273 NA coding downstream 602687 11377992 ~ 11379853 (+)
XLOC_011274 CU076099.4 coding downstream 626642 11401947 ~ 11401960 (+)
XLOC_011259 NA non-coding upstream 829130 9916763 ~ 9942723 (+)
XLOC_011252 FO818681.1 non-coding upstream 2299636 8472101 ~ 8472217 (+)
XLOC_011250 NA non-coding upstream 2456396 8308590 ~ 8315457 (+)
XLOC_011249 BX248131.2 non-coding upstream 2471349 8300390 ~ 8300504 (+)
XLOC_011246 NA non-coding upstream 2541970 8225655 ~ 8229883 (+)
XLOC_011275 NA non-coding downstream 643178 11418483 ~ 11419622 (+)
XLOC_011276 NA non-coding downstream 717545 11492850 ~ 11495433 (+)

Expression


Co-expression Network