G331470


Basic Information

Item Value
gene id G331470
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 913392 ~ 916537 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376780
TATTCTGGGTGACACAACATCAGCTCCTTGCATGTGCGGGCAGGACTCTCGAAGGTCCCGAGTGGTTTTCTCATGAGCTCCACCTCTGTTTTCATTGAGTTGAGCGAAGCGAACACCTCCTCCATGCCTTCTGGGTCATCCAGAGACTCGTCTGCCTGTAGAAAATCCTCCATGTTAAGCTGGACTACTTCCTCCTCTTCAGTCTCTGCCCTGGCTCCGACTCCTTGTCGGTTTGAATGTCTCCTTCGCTTTTTACGTCCCTCTCTGATTGGCAGTGGCTCGATCATGGTGGCTGGTGGGCCAGGTGGTCCAGGTGGGCCAGCATGTCCTGGATCTCCTCTTGCACCGATGGCTCCCTGGTCTCCTTTAGATCCTTTCTCACCTATTGCACCAGACAACCCAGGGGGTCCAGGTGGGCCAGTAGGGCCAGGGGGGCCACCAACTCCACCATCTCCTTTGGGGCCTTGTACTCCCTGATTTCCTGGCAGGCCTCGATCTCCTTTCTCTCCAATCTCTCCTGGAGGTCCAATCAGTCCAATAAGCCCACCATGACCCTTATCTCCTTTAATGCCAGGATCTCCTTTCAGTCCTGGTAATCCAGCTGGCCCCATAGGTCCTGGGGGTCCTGTTTGCCCTGGGGGACCGTTTAACCCTTGCTCCCCAGCAGAGCCTGGAATCCCACGCAAACCCTCTGGACCAGGGTTTCCAGGGTGTCCCTGTGGTCCGACAGGCCCTATCTTCCCCATTGGACCCTCTGTACCAGCAGAACCCTTTGCCCCCTTTTTTCCCTGTTTCCCTTCTTTTCCCTCAGGACCTACATGTCCCCTCCGTCCCGGTGGCCCTGGAGGGCCAGGCTCCCCTGAGGCTCCTTGGGGTCCAGGGTTACCGGGATCGCCATTATCCCCTTTAGCTCCTGGTCCACCATCAATACCATTAGCACCTGGCTCTCCAGGGGATCCCGAGTCTCCAGGAAATCCAAGGGGACCTGGGTTCCCTTTGGGTCCATCTGATCCAGGTGTGCCTCTGATTCCTGGGGGACCTGCAGCCCCAGAGGGGCCGGTATCACCCTTCTCACCCAAGTCACCTTTTTCTCCAGGGGGGCCAGTTTCACCCACATTTCCTGGATTCCCTGCTTCTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU376780 True 1139 TUCP 0.57 14 913392 916537

Neighbor

gene id symbol gene type direction distance location
CI01000113_00659612_00684227 TRIP10, TRIP10A coding upstream 228362 659612 ~ 685030 (+)
CI01000113_00645261_00649236 NA coding upstream 263577 645261 ~ 649815 (+)
CI01000113_00629848_00638123 ANGPTL6 coding upstream 274960 628843 ~ 638432 (+)
CI01000113_00574016_00587822 DNMT1 coding upstream 325310 573455 ~ 588082 (+)
CI01000113_00568754_00569821 S1PR2 coding upstream 342876 568410 ~ 570516 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding downstream 80326 996863 ~ 1005399 (+)
CI01000113_01072283_01091398 NOTCH3 coding downstream 155368 1071905 ~ 1091730 (+)
CI01000113_01110162_01112498 NA coding downstream 193625 1110162 ~ 1112502 (+)
CI01000113_01120464_01124821 NA coding downstream 203861 1120398 ~ 1125031 (+)
CI01000113_01127641_01134250 NA coding downstream 211104 1127641 ~ 1134481 (+)
G331473 NA non-coding upstream 25524 887668 ~ 887868 (+)
G331456 NA non-coding upstream 43643 869338 ~ 869749 (+)
G331413 NA non-coding upstream 137207 770294 ~ 776185 (+)
G331406 NA non-coding upstream 187702 725459 ~ 725690 (+)
G331405 NA non-coding upstream 189391 723787 ~ 724001 (+)
G331491 NA non-coding downstream 9117 925654 ~ 928787 (+)
G331506 NA non-coding downstream 14553 931090 ~ 932374 (+)
G331504 NA non-coding downstream 23989 940526 ~ 942201 (+)
G331510 NA non-coding downstream 37454 953991 ~ 973533 (+)
G331528 NA non-coding downstream 60772 977309 ~ 977746 (+)
G331260 NA other upstream 578771 334158 ~ 334621 (+)
G331487 NA other downstream 1198 917735 ~ 922133 (+)
G331615 NA other downstream 329754 1246291 ~ 1246573 (+)
CI01000113_01424978_01425704 NA other downstream 508024 1424968 ~ 1425835 (+)
G331767 NA other downstream 746248 1662785 ~ 1663255 (+)
G331759 NA other downstream 751465 1668002 ~ 1828903 (+)

Expression


Co-expression Network