G331530


Basic Information

Item Value
gene id G331530
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 986083 ~ 986441 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376856
AAATGAGCTCATTTCAAATTTGATGCCTGCTATAGGTCTCAAAAAAGTTGGCACGGGGGCAACAAATGGCTGAAAAAGCAAGAAATTTTGAAAAGATTTAGCTGGGAGAACATCTAGCAACTAATTAAGTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCAGAAGTAAAGATGGGCAGAGCTGTGAAAGAGTGCGTAAAAAGATTGCGGAATACTTTAAAAACAATGTTCCTCAACGTCAAATTGCAAAGGCTTTGCAAATCTCATCATCTACAGTGCATAACATCATCAAAAGATTTAGAGAAACTGGAGAAATCTCTGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376856 True 359 lncRNA 0.37 1 986083 986441

Neighbor

gene id symbol gene type direction distance location
CI01000113_00659612_00684227 TRIP10, TRIP10A coding upstream 301053 659612 ~ 685030 (+)
CI01000113_00645261_00649236 NA coding upstream 336268 645261 ~ 649815 (+)
CI01000113_00629848_00638123 ANGPTL6 coding upstream 347651 628843 ~ 638432 (+)
CI01000113_00574016_00587822 DNMT1 coding upstream 398001 573455 ~ 588082 (+)
CI01000113_00568754_00569821 S1PR2 coding upstream 415567 568410 ~ 570516 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding downstream 10422 996863 ~ 1005399 (+)
CI01000113_01072283_01091398 NOTCH3 coding downstream 85464 1071905 ~ 1091730 (+)
CI01000113_01110162_01112498 NA coding downstream 123721 1110162 ~ 1112502 (+)
CI01000113_01120464_01124821 NA coding downstream 133957 1120398 ~ 1125031 (+)
CI01000113_01127641_01134250 NA coding downstream 141200 1127641 ~ 1134481 (+)
G331529 NA non-coding upstream 6365 979324 ~ 979718 (+)
G331528 NA non-coding upstream 8337 977309 ~ 977746 (+)
G331510 NA non-coding upstream 12550 953991 ~ 973533 (+)
G331504 NA non-coding upstream 43882 940526 ~ 942201 (+)
G331506 NA non-coding upstream 53709 931090 ~ 932374 (+)
G331496 NA non-coding downstream 77507 1063948 ~ 1069971 (+)
G331495 NA non-coding downstream 131370 1117811 ~ 1118539 (+)
G331644 NA non-coding downstream 210343 1196784 ~ 1197024 (+)
G331645 NA non-coding downstream 211955 1198396 ~ 1198598 (+)
G331646 NA non-coding downstream 212955 1199396 ~ 1199629 (+)
G331487 NA other upstream 63950 917735 ~ 922133 (+)
G331470 NA other upstream 69546 913392 ~ 916537 (+)
G331260 NA other upstream 651462 334158 ~ 334621 (+)
G331615 NA other downstream 259850 1246291 ~ 1246573 (+)
CI01000113_01424978_01425704 NA other downstream 438120 1424968 ~ 1425835 (+)
G331767 NA other downstream 676344 1662785 ~ 1663255 (+)
G331759 NA other downstream 681561 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 1356980 2342987 ~ 2346006 (+)

Expression


Co-expression Network