Gene
RNA
| Item | Value |
|---|---|
| gene id | G332574 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 1239671 ~ 1239956 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU378095 | True | 286 | lncRNA | 0.36 | 1 | 1239671 | 1239956 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000113_01208541_01221483 | STXBP2 | coding | downstream | 17588 | 1207889 ~ 1222083 (-) |
| CI01000113_01180049_01192316 | XAB2, SYF1 | coding | downstream | 47355 | 1179836 ~ 1192316 (-) |
| CI01000113_01137145_01178626 | CAMSAP3 | coding | downstream | 61045 | 1136997 ~ 1178626 (-) |
| CI01000113_01096667_01106622 | RDH8 | coding | downstream | 132801 | 1096322 ~ 1106870 (-) |
| CI01000113_00907179_00957938 | COL5A3B, COL5A3, COL5A3A | coding | downstream | 281577 | 906941 ~ 958094 (-) |
| CI01000113_01252186_01255334 | NA | coding | upstream | 12230 | 1252186 ~ 1255410 (-) |
| CI01000113_01259501_01275141 | BRD4, BRD2, BRD3 | coding | upstream | 19182 | 1259138 ~ 1275141 (-) |
| CI01000113_01351820_01359750 | PBX3, PBX1 | coding | upstream | 111456 | 1351412 ~ 1361658 (-) |
| CI01000113_01396970_01402406 | NA | coding | upstream | 156475 | 1396431 ~ 1402406 (-) |
| CI01000113_01404787_01423732 | ATP13A1 | coding | upstream | 164710 | 1404666 ~ 1423732 (-) |
| G332524 | NA | non-coding | downstream | 121124 | 1117811 ~ 1118547 (-) |
| G332458 | NA | non-coding | downstream | 262148 | 977300 ~ 977523 (-) |
| G332427 | NA | non-coding | downstream | 369932 | 863334 ~ 869739 (-) |
| G332405 | NA | non-coding | downstream | 392859 | 838581 ~ 846812 (-) |
| G332415 | NA | non-coding | downstream | 484709 | 754741 ~ 754962 (-) |
| G332523 | NA | non-coding | upstream | 6337 | 1246293 ~ 1246573 (-) |
| G332587 | NA | non-coding | upstream | 167864 | 1407820 ~ 1408432 (-) |
| G332596 | NA | non-coding | upstream | 303278 | 1543234 ~ 1543454 (-) |
| G332597 | NA | non-coding | upstream | 304234 | 1544190 ~ 1544419 (-) |
| G332160 | NA | other | downstream | 792834 | 390227 ~ 446837 (-) |
| G332210 | NA | other | downstream | 1190186 | 47990 ~ 49485 (-) |
| G332649 | NA | other | upstream | 907258 | 2147214 ~ 2148558 (-) |
| G332837 | NA | other | upstream | 1010889 | 2250845 ~ 2251213 (-) |
| CI01000113_02356565_02370009 | NA | other | upstream | 1127660 | 2356565 ~ 2370009 (-) |
